BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892173
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02630.1 | Symbols: | Lung seven transmembrane receptor fam... 1821 0.0
> AT5G02630.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr5:591771-593187 FORWARD LENGTH=1417
Length=1417
Score = 1821 bits (986), Expect = 0.0
Identities = 1203/1305 (92%), Gaps = 25/1305 (2%)
Strand=Plus/Plus
Query 1 ATGACGATATTACCCTTTTTCGCTGCCGTCGTCGTCCTCCAGCTCTTCTCTAGTCTCACG 60
|||||||||||||||||| |||| ||||| |||||||||| ||| |||| | |||||||
Sbjct 28 ATGACGATATTACCCTTTCTCGCCGCCGTATTCGTCCTCCAACTCCTCTCAACTCTCACG 87
Query 61 GTGGCGGAGATTAAGTCTCTGACTATCTCCAACGATTCTCGGCCAATAATTCTCTTGGAG 120
|| |||||||| |||||| | |||||||||||||||||||||||| | ||||||||||||
Sbjct 88 GTCGCGGAGATCAAGTCTTTCACTATCTCCAACGATTCTCGGCCAGTGATTCTCTTGGAG 147
Query 121 AAATTCGTTATTATTGAGATTGGTCATGTAACCGTCTCTGTTTCCTCTGTTTCAGTATCG 180
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 148 AAATTCGGTATTATTGAGATTGGTCATGTAACCGTCTCTGTTTCCTCTGTTTCAGTATTG 207
Query 181 TCTCCTTCATCTTCCCCGGTTCCAGACTCGTCGAAATTAGGGTTCCTTGTTCTATCAGAA 240
||||| | || | | |||||||||||||||||||||| ||||||||||||||
Sbjct 208 TCTCC--GA--TT---C---T--AGACTCGTCGAAATTAGGGTTCTTTGTTCTATCAGAA 255
Query 241 GAATCTCTTCCTGAGGTACTCCTCGAGCTCCAGCAAAACTTTAGCTTCTGCGTTCTTGAT 300
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 GAATCTCTTCCTCATGTACTCCTCGAGCTCCAGCAAAACTTTAGCTTCTGCGTTCTTGAT 315
Query 301 TCACACTACATACTCCATTTCTTCACCTTCATCGATCTCTCTCCTCCTCCTCGCTCTCAG 360
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 316 TCACACTACATACTTCATTTCTTCACCTTCGTCGATCTCTCTCCTCCTCCTCGCTCCCAG 375
Query 361 TTCAATAAATCTTATCTGATAACGTCTCCTAGCGATTACTCTCTGTTCTTCGCTAATTGC 420
|||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 376 TTCAGTAAATCTTATCCGATAACGTCTCCAAACGATTACTCTCTGTTCTTCGCTAATTGC 435
Query 421 GTACCGGAAACTAGGGTTTCGATGAAGGTCCGAGCA--GAGATTTATCACAATCTAGATC 478
||||| ||||||||||||||||||||||||| | || |||||||||||| ||||| |||
Sbjct 436 GTACCAGAAACTAGGGTTTCGATGAAGGTCC-A-CACGGAGATTTATCACGATCTATATC 493
Query 479 CAAACGGGTCAAACTCAAAAGATTACTTACTAGCCGGGTCAACCCAGTTACCTGGTTTGT 538
|||||||| |||| |||||||||||||||||||||| |||||||||| |||||||
Sbjct 494 CAAACGGG------TCAAGAGATTACTTACTAGCCGGGTCAGCCCAGTTACCGGGTTTGT 547
Query 539 ATCTCGTCTTCTCTCTCTGTTACTTGAGTTTCCTCTGTTTCTGGTTCTGTTTCTGCTGGA 598
|||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 548 ATCTCGTCTTTTTTCTCTGTTACTTGAGTTTCCTCTGTTTCTGGCTCTGTTTCTGCTGGA 607
Query 599 A-CAATAAGCAAATTGCTAAAAGGATTCACCTTTTAATGACGGTTCTGCTTCTAGTGAAA 657
| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 608 ATC-ATAAGCAAATTGTTAAAAGGATTCACCTTTTAATGACGGCTCTGCTTCTAGTGAAA 666
Query 658 TCTCTGACTCTGATTTGTGCTGCTGTGTATAAACATTACGTGAAAGTCACAGGCACAGCT 717
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 667 TCTCTGACTCTGATTTGTGCTGCTGTGTATAAACACTACGTGAAAGTCACAGGCACAGCT 726
Query 718 CATGGCTGGAACATTGTTTTCTACATTTTCCAATTCATTAGTGTCGTTTTGCTTTTCACG 777
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 727 CATGGCTGGAACATTGTTTTCTACATTTTCCAATTCATTAGTGTTGTTTTGCTCTTCATG 786
Query 778 GTGATTGTTCTAATCGGAAACGGTTGGTCTTTCTTGAAACTGAAGCGACATGGTAAGGAG 837
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 787 GTGATTGTTCTAATCGGAAACGGTTGGTCTTTCTTGAAACCGAAGCTACATGTTAAGGAG 846
Query 838 AAGAAGTTGTTGATGATTGTTGTTCCGCTTCAGGTTTTAGCTAACATTGCTTCGATTGTG 897
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 847 AAGAAATTGTTGGTGATTGTTGTTCCGCTTCAGGTTTTAGCTAACATTGCTTCCATTGTG 906
Query 898 ATTGGAGAAACTGGACCGTACACTCAAGATTGGGTGATTTGGAACCAGATCTTCTTGCTT 957
|||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct 907 ATTGGAGAGACTGGACCGTACACCCAAGATTGGGTGAGTTGGAACCAGATCTTCTTCCTA 966
Query 958 GCTGATATAACTTGCTGTTTTGTGATTGTATTCGCAATGGTTTGGTCGATGTGTTGTCTA 1017
||||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||
Sbjct 967 GCTGATATAACTTGCTGTTGTGCGATTGTATTCGCTATGGTTTGGTCCATGTGTTGTCTA 1026
Query 1018 CGAGAGACATCGAAAACCGATGGGAAAGCGGTGAAGAACTTAGCCAAGTTACCAGTTTTT 1077
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1027 AGAGAGACATCGAAAACCGATGGGAAAGCGGTAAAGAACTTAGCCAAGTTACCAGTTTTA 1086
Query 1078 AGGAAATTCTACGTTTTGGTCATTGGATATTTGTTCTTCACAAGGATCGTTGTGGTTGTT 1137
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1087 AGGAAATTTTACGTTTTGGTTATTGGATATTTGTTCTTCACGAGGATCGTTGTGGTTGTT 1146
Query 1138 GTGAAGATGAAAACAGATTTTAGGTATCAGTGGCTGAGCAATGCATCTGAGGAAATTGCA 1197
||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 1147 ATGAAGATGAAAGCAGATTTTACGTATCAGTGGGTGAGCAATGCAGCTGAGGAAATTGCA 1206
Query 1198 ACTCTTGCGTTTTATAGTTTGATGTTTTATATGTTTAGGCCAATGGAGAAGAGTGAGTAT 1257
|||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1207 ACTCTTTCGTTTTATTGTTTGATGTTTTATATGTTTAGGCCAATAGAGAAGAACGAGTAT 1266
Query 1258 TTTGATGTTGATAATGAAGAAGAAACTGCAGAGCTTTC-CTCAAG 1301
| |||||||||| |||||||||||| || ||||||||| ||||||
Sbjct 1267 TGTGATGTTGATGATGAAGAAGAAATTGTAGAGCTTTCTCTCAAG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5