BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892184
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28410.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1736 0.0
AT5G02700.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1596 0.0
> AT3G28410.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:10640152-10642071 REVERSE LENGTH=1398
Length=1398
Score = 1736 bits (940), Expect = 0.0
Identities = 1274/1428 (89%), Gaps = 51/1428 (4%)
Strand=Plus/Plus
Query 1 ATGGCGAATAGGCGAGAGAAACGGGGCCGGCGAAAACGTCGTAGAAAGCCTAGCCACCGC 60
|||||||| |||||||||||||||||||| || ||| | | | | | ||||||||||
Sbjct 1 ATGGCGAAAAGGCGAGAGAAACGGGGCCGACG---ACGAC--A-ACATCGTAGCCACCGC 54
Query 61 AAAATCAAACGAATAATCGACGGTGCAGATTTCATCAACTCTATGCCAGATGAGATCCTT 120
|||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 55 AAAATCCAACGAATAATCGATGGTGCAGATTTCATCAACTATATGCCAGATGATATCCTT 114
Query 121 CACCATATTCTCTCCCTTATTCCCACCGATTTGGCCATGAAAACTTCCGTCTTATCCA-G 179
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |
Sbjct 115 CACCATATTCTCTCCTTTATTCCCACCGATTTGGCCATGAGAACTTCCGTCTTAT-CACG 173
Query 180 ACGATGGAGGCATGTATGGTGCGAGACACCTTGTCTCGACATCAATGTGTGTAGACTCAA 239
|||||||||||||||||||||||||||||||||||||| | | | | || ||||||
Sbjct 174 ACGATGGAGGCATGTATGGTGCGAGACACCTTGTCTCG--A-C-A----T-TAAACTCAA 224
Query 240 CG-GCGGA-ACGGTGAACCAAACCCTAACTTCCTACACGGCTCCCAAAATCACTAGTTTC 297
| |||| | | |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 225 -GCACGGAGA-GACGAACCAAACCCTAACTTCCTACACGGCTCCCATAATAACTAGTTTC 282
Query 298 AAACTTCTTA-CGAGCTTGGATC-ACAACACTGCACCCGAGATTGATAGCTGGATCGAGT 355
|||||| ||| || ||| | | ||||||||| |||| || ||||||||||||||||||
Sbjct 283 AAACTTGTTATGGACCTT--AACGACAACACTGTACCCCAGGTTGATAGCTGGATCGAGT 340
Query 356 TCCCTATCTCCCGCAATGTGCAAAATCTGTCTGTGTTCGTTAGGGATTTCAAATAC-CGC 414
| || ||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 341 TTGCTCTCTCCCGCAATGTGCAAAATCTGTCTGTGTTCGTTAGGGATTTCACATACAC-C 399
Query 415 AAGACTTACAG-TTTCCCAG-TTTCCTTTTATCTCAGTTCCTCCTTAAAGCAACTC-ACC 471
||||||||||| ||| |||| | | ||| ||| ||||||||||||||||||||||| | |
Sbjct 400 AAGACTTACAGATTT-CCAGATAT-CTTCTATATCAGTTCCTCCTTAAAGCAACTCGA-C 456
Query 472 GTGACGTTAGACtttttttATATGACTCCCACATGCAAAGTGTCTTGGAAATCCCTAAGG 531
|||||||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 457 GTGACGTTGGACTTTTTTGATATGATTCCCACATGCGCAGTGTCTTGGAAATCCCTAAGG 516
Query 532 AACTTGGCACTGCGTCGTTGT-AAACTTCCAGATGGATCCATTG-ATAATATTCTCTCTG 589
||||| |||||||| |||| ||| ||||||| | ||||| || |||||||||||||||
Sbjct 517 AACTTAACACTGCGTTTTTGTCAAA-TTCCAGACGAATCCA-TGCATAATATTCTCTCTG 574
Query 590 GCTGTCCAATTCTCGAAAGCTTGACATTGGGTACATGCAGATTACTTGAGCGTCTTGATC 649
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 575 GCTGTCCAATTCTCGAAAGCTTGACACTGGATACATGCAGATTACTTGAGCGTCTTGATC 634
Query 650 TGAGTAAATCACCGAGTCTGAGGAGATTGGATATAAATCGGCAATATTG-CGACACAGGA 708
||||||||||||||| |||||||||||||||||||||| |||||||| | || |||||||
Sbjct 635 TGAGTAAATCACCGAATCTGAGGAGATTGGATATAAATAGGCAATATCGCCG-CACAGGA 693
Query 709 CCAATTGCGATTGTAGCGCCACACATCCATTATTTGAGACTGACATACTCTAGTACACCA 768
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 694 CCAATTGCGATTGTTGCGCCACACATCTATTATTTGAGACTGACATACTCTAGTACACCA 753
Query 769 TCTACTTTACTGGATGTATCCTCTTTGATCGAAGCTAACCTTAACATTATCA--G-TAGC 825
|||||| || ||||||| |||||||||| |||||| |||||||||||||||| | | ||
Sbjct 754 TCTACTATAGTGGATGTCTCCTCTTTGAGCGAAGCCAACCTTAACATTATCAGCGATCGC 813
Query 826 CGACTCTGTCCCTTGACTGCTGATCGTTATCAAACTATGGCACTAAAGATGCTAGCAAAC 885
| ||||| ||||||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 814 CTACTCTCTCCCTTGACTGCTGATCGTTATCAAACCATGGCGCTGGAGATGCTATCAAAA 873
Query 886 TCGCACAACGTAGAGAGGCTTACTGTTGGAGAAACCCTTCTTCAGATTTTATCGCTTGCC 945
| ||||||||| |||||||||||||||| |||||| ||||||||||| |||| || |||
Sbjct 874 TTTCACAACGTAAAGAGGCTTACTGTTGGGGAAACCATTCTTCAGATTCTATCTCTCGCC 933
Query 946 GAGCTCCGTGGTGTTCCTTTCCCAACACTCAAGGTCCAAACTTTGATTGTTAAAACGGAG 1005
|||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 934 GAGCTCCGCGGTGTTCCTTTCCCAACGCTCAAGGTCCAAACTTTGACTGTTAAAACGGAG 993
Query 1006 TTCGTTCGATCTGTAATCCCTGGTATATCAAGGCTACTACAGAATTCACCTGGATTAAAG 1065
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 994 TTCGTTCGATCTGTAATCCCTGGTATATCAAGGTTACTACAGAATTCACCTGGATTAAAG 1053
Query 1066 AAGCTAACATTACACACGAT-GCAGCAAAGCCACGTCATAATGGATATGCATCCTTTAAA 1124
||||||||||||||||| || ||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1054 AAGCTAACATTACACAC-ATTGCAGCTAAGCCACGACATAATGGAAATGCATCCTTTAAA 1112
Query 1125 AGGTTTCTATCCGGATCAATGTTGGAGATCAAAATGTGAGATGTTTCCTACCTCAAAGGA 1184
|||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1113 AGGTTTATATCCGGATCAATGTTGGAGATCAACATGTGAGGTGTTTCCTACCTCAAAGGA 1172
Query 1185 GATCTATGAGATGTTGGGTTGTAATGATGCAACGTCGAAACTCGTGGCTTCGTTCTCCGA 1244
|||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1173 GATCTACAAGATGTTGGGTTGTAATGATGCAACGTCGAAACTCGTGGCTTCGTT-TATGA 1231
Query 1245 ATT-GGTGTTGAGAAACGCAAAGACACTAGAGATGATGGTTGTATGGTTGGGAGGTAGT- 1302
||| |||| |||||||||||||||| ||||||| ||||||||| ||||||||||| | |
Sbjct 1232 ATTTGGTGCTGAGAAACGCAAAGACGCTAGAGAGGATGGTTGTTTGGTTGGGAGGCA-TC 1290
Query 1303 TACTTCAATGATGATGCACAATGGTTCCAACA-G--CTGCTTCAGATGGTTGCAACACTT 1359
||||| |||| |||||||| |||||| || | | ||| || | ||||||| |||||||
Sbjct 1291 TACTTTAATGGTGATGCACCATGGTTTGAAGAAGAGCTGTTTGACATGGTTGAAACACTT 1350
Query 1360 TCTCACGACAATAATGTCTCCATTTTGCTCAAACGAAGCAATTGCTAA 1407
|||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1351 TCTCACAACAATAATGTCTCCATTTTGCTCAAACAAAGCAATTGCTAA 1398
> AT5G02700.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:609381-611679 REVERSE LENGTH=1371
Length=1371
Score = 1596 bits (864), Expect = 0.0
Identities = 1247/1422 (88%), Gaps = 66/1422 (5%)
Strand=Plus/Plus
Query 1 ATGGCGAATAGGCGAGAGAAACGGGGCCGGCGAAAACGTCGTAGAAAGCCTAGCCACCGC 60
|||||||| |||||||||| ||||||||| ||| ||| || | ||||||||||
Sbjct 1 ATGGCGAAAAGGCGAGAGAGACGGGGCCGACGACAACATC-------G--TAGCCACCGC 51
Query 61 AAAATCAAACGAATAATCGACGGTGCAGATTTCATCAACTCTATGCCAGATGAGATCCTT 120
| |||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 52 AGAATCCAACGAATAATCGATGGTGCAGATTTCATCAACTATATGCCAGATGATATCCTT 111
Query 121 CACCATATTCTCTCCCTTATTCCCACCGATTTGGCCATGAAAACTTCCGTCTTATCCAGA 180
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 112 CACCATATTCTCTCCTTTATTCCCACCGATTTGGCCATGAGAACTTCCGTCTTATCCCGA 171
Query 181 CGATGGAGGCATGTATGGTGCGAGACACCTTGTCTCGACATCAATGTGTGTAGACTCAAC 240
||||||||||||||||||||||||||||||||||||| | | | | || ||||||
Sbjct 172 CGATGGAGGCATGTATGGTGCGAGACACCTTGTCTCG--A-C-A----T-TACACTCAA- 221
Query 241 G-GCGGAACGGTGAACCAAACCCTAACTTCCTACACGGCTCCCAAAATCACTAGTTTCAA 299
| |||| || ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 222 GCACGGAGCGATGAACCAAACCCTAACTTCCTACACGGCTCCCATAATCACTAGTTTCAA 281
Query 300 ACTTCTTA-CGAGCTTGGATCA-CAACACTGCACCCGAGATTGATAGCTGGATCGAGTTC 357
|||| ||| || ||| | || |||||||| |||| || |||||||||||||||||||
Sbjct 282 ACTTGTTATGGACCTT--AACAGCAACACTGTACCCCAGGTTGATAGCTGGATCGAGTTT 339
Query 358 CCTATCTCCCGCAATGTGCAAAATCTGTCTGTGTTCGTTAGGGATTTCAAATAC-CGCAA 416
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 340 GCTCTCTCCCGCAATGTGCAAAATCTGTCTGTGTTCGTTAGGGATTTCACATACTC-CAA 398
Query 417 GACTTACAG-TTTCCCAG-TTTCCTTTTATCTCAGTTCCTCCTTAAAGCAACTC-ACCGT 473
||||||||| ||| |||| | | ||| |||||||||||||||||||||| |||| | |||
Sbjct 399 GACTTACAGATTT-CCAGATAT-CTTCTATCTCAGTTCCTCCTTAAAGCTACTCGA-CGT 455
Query 474 GACGTTAGACtttttttATATGACTCCCACATGCAAAGTGTCTTGGAAATCCCTAAGGAA 533
|||||| ||||||||| |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 456 GACGTTGGACTTTTTTGATATGATTCCCACATGCACAGTGTCTTGGAAATCCCTAAGGAA 515
Query 534 CTTGGCACTGCGTCGTTGT-AAACTTCCAGATGGATCCATTGATAATATTCTCTCTGGCT 592
||| |||||||| |||| ||| ||||||| | ||||||| ||||||||||||||||||
Sbjct 516 CTTAACACTGCGTTTTTGTCAAA-TTCCAGACGAATCCATTCATAATATTCTCTCTGGCT 574
Query 593 GTCCAATTCTCGAAAGCTTGACATTGGGTACATGCAGATTACTTGAGCGTCTTGATCTGA 652
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 575 GTCCAATTCTCGAAAGCTTGACACTGGATACATGCAGATTACTTGAGCGTCTTGATCTGA 634
Query 653 GTAAATCACCGAGTCTGAGGAGATTGGATATAAATCGGCAATATTG-CGACACAGGACCA 711
|||||||||||| ||||||||||||||||||||||| ||||||| | || ||||||||||
Sbjct 635 GTAAATCACCGAATCTGAGGAGATTGGATATAAATCAGCAATATCGCCG-CACAGGACCA 693
Query 712 ATTGCGATTGTAGCGCCACACATCCATTATTTGAGACTGACATACTCTAGTACACCATCT 771
|||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 694 GTTGCGATTGTTGCGCCACACATCTATTATTTGAGACTGACATACTCTAGCACACCATCT 753
Query 772 ACTTTACTGGATGTATCCTCTTTGATCGAAGCTAACCTTAACATTATCAGTAGCCGACTC 831
||| || ||||||| |||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 754 ACTATAGTGGATGTCTCCTCTTTGAGCGAAGCTAACCTTACCATTATCAGTAGCCTACTC 813
Query 832 TGTCCCTTGACTGCTGATCGTTATCAAACTATGGCACTAAAGATGCTAGCAAACTCGCAC 891
| |||||||||||| ||| |||||||||| ||||| || |||||||| |||| | |||
Sbjct 814 TCTCCCTTGACTGCAGATGGTTATCAAACCATGGCGCTGGAGATGCTATCAAAATTTCAC 873
Query 892 AACG-TAGAGAGGCTTACTGTTGGAGAAACCCTTCTTCAGATTTTATCGCTTGCCGAGCT 950
|||| || |||||||||||||||| |||||||||||||||||| |||| || ||||||||
Sbjct 874 AACGTTA-AGAGGCTTACTGTTGGGGAAACCCTTCTTCAGATTCTATCTCTCGCCGAGCT 932
Query 951 CCGTGGTGTTCCTTTCCCAACACTCAAGGTCCAAACTTTGATTGTTAAAACGGAGTTCGT 1010
||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 933 CCGCGGTGTTCCTTTCCCAACGCTCAAGGTCCAAACTTTGACTGTTAAAACGGAGTTCGT 992
Query 1011 TCGATCTGTAATCCCTGGTATATCAAGGCTACTACAGAATTCACCTGGATTAAAGAAGCT 1070
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 993 TCGATCTGTAATCCCTGGTATATCAAGGTTACTACAGAATTCACCTGGATTAAAGAAGCT 1052
Query 1071 AACATTACACACGATGCAGCAAAGCCACGTCATAATGGATATGCATCCTTTAAAAGGTTT 1130
|| | || | | | ||| | | | |||| || ||| || |||||||||
Sbjct 1053 AAGAC--CAT-C--T--A-CAATG--A----A-AATGCAT---CAT--TT-AAAAGGTTT 1091
Query 1131 CTATCCGGATCAATGTTGGAGATCAAAATGTGAGATGTTTCCTACCTCAAAGGAGATCTA 1190
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1092 ATATCCGGATCAATGTTGGAGATCAACATGTGAGGTGTTTCCTACCTCAAAGGAGATCTA 1151
Query 1191 TGAGATGTTGGGTTGTAATGATGCAACGTCGAAACTCGTGGCTTCGTTCTCCGAATT-GG 1249
||||||||||||||||||||||||||| |||||||||||||||||| | | ||| ||
Sbjct 1152 CAAGATGTTGGGTTGTAATGATGCAACGTTGAAACTCGTGGCTTCGTT-TATGGATTTGG 1210
Query 1250 TGTTGAGAAACGCAAAGACACTAGAGATGATGGTTGTATGGTTGGGAGGTAGT-TACTTC 1308
|| |||||||||||||||| ||||||| ||||||||| ||||||||||| | | |||||
Sbjct 1211 TGCTGAGAAACGCAAAGACGCTAGAGAGGATGGTTGTTTGGTTGGGAGGCA-TCTACTTT 1269
Query 1309 AATGATGATGCACAATGGTTCCAACA-G--CTGCTTCAGATGGTTGCAACACTTTCTCAC 1365
|||| |||||||| |||||| || | | ||| || | ||||||| ||||||||||| |
Sbjct 1270 AATGGTGATGCACCATGGTTTGAAGAAGAGCTGTTTGACATGGTTGAAACACTTTCTCGC 1329
Query 1366 GACAATAATGTCTCCATTTTGCTCAAACGAAGCAATTGCTAA 1407
||||||||||||||||||||||||||| |||||||||||||
Sbjct 1330 AACAATAATGTCTCCATTTTGCTCAAACAAAGCAATTGCTAA 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5