BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892198
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02930.1 | Symbols: | F-box/RNI-like superfamily protein | ... 797 0.0
AT5G02920.1 | Symbols: | F-box/RNI-like superfamily protein | ... 488 5e-137
> AT5G02930.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:682577-684480 FORWARD LENGTH=1410
Length=1410
Score = 797 bits (431), Expect = 0.0
Identities = 882/1088 (81%), Gaps = 77/1088 (7%)
Strand=Plus/Plus
Query 64 CGTCCCGTCAAAATCAAACGATCAAGAAGTGATTCAATCGA---TGGTGTAGACTCAATC 120
|||||||||| | |||||||||| || || |||| |||| ||||||||||||||||
Sbjct 31 CGTCCCGTCATGTTTAAACGATCAAAAAATGTTTCAGTCGATGTTGGTGTAGACTCAATC 90
Query 121 AGCGATCTACCAGACGCGGTTCTCCAACATATCTTCTCCTATATTCCGACAAAGTTCGCG 180
||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 91 AGCGATCTACCCGACGCTGTTCTCCAACATATCTTCTCCTATATTCCGACAGAGTTGGCG 150
Query 181 ATCAGAACCTCCGTCTTGTCCAGGCGATGGAGACATGTATGGTCGGAGACACCTCATCTC 240
||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 151 ATCAGAACCTCTGTCTTGTCCAAACGATGGAGACATGTATGGTCCGAGACACCTCATCTC 210
Query 241 TCCTTTAAATGGCTC-AGTGTTTCCCC-AGAATCGGTAAACAAAACCCTAGCGAGCTACA 298
|||||| |||||||| || |||||||| | ||| | |||||||||||||||| |||||||
Sbjct 211 TCCTTTGAATGGCTCAAG-GTTTCCCCTA-AATTGATAAACAAAACCCTAGCCAGCTACA 268
Query 299 AGGCTTCCAAAATCACGAGTTTTCATCTCTGTACCCGTTTAGCCAGC-AC--GGC--TCA 353
||||||||| |||| ||||||||||||||||||||| ||| |||| || ||| ||
Sbjct 269 CGGCTTCCAAGATCAAGAGTTTTCATCTCTGTACCCG-TTA--CAGCTACGAGGCAGACA 325
Query 354 -TCACCATGTTAATAGCTGGATCGAGTTTGCAATGTCTCACAACGTGGATGATCTTTTTC 412
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 326 CTCACCATGTTAACAGCTCGATCGAGTTTGCAATGTCTCACAACGTGGATGATCTTTCTC 385
Query 413 TGGAGTTCCGTGGTTTTCTCACAACGATGAATTACAGTTTTCCA-GATTTCTTCTACAGC 471
||| ||||||| | | | |||| || | ||||| |||| | |||| |||||||| |
Sbjct 386 TGGCGTTCCGTAGATGT-TCAC--CGTT---TTACAATTTTG-ATGATTGCTTCTACACC 438
Query 472 AATTCCTCTCTAAAGA-ACCTCATAGTAGACTCACGATGTAATGAGATGATTCCCAGATG 530
|| |||||||||||| | || ||| || | |||| ||| |||| ||||| ||
Sbjct 439 AACTCCTCTCTAAAGCGAG-TCG-AGTTGAG--AT-ATGT--TGATTTGATGCCCAGGTG 491
Query 531 CACCGTGTCTTGGACGTCACTAAAGTACTTGTCTTTGAGCTG-TTGTG-AACTCTCTGAT 588
|| ||||||||||| ||||||||| || ||||||||| | | |||| || | ||||||
Sbjct 492 CATGGTGTCTTGGACATCACTAAAGAACCTGTCTTTGACC-GATTGTACAA-TGTCTGAT 549
Query 589 GAATCCTTTCTTAAGATTCTGTCTGGTTGTCCAATCCTGGAAACCTTGAGATTGTATAGT 648
|||||||||||| |||||||||||||||||||||||||||||| |||||| ||| | |||
Sbjct 550 GAATCCTTTCTTGAGATTCTGTCTGGTTGTCCAATCCTGGAAAGCTTGAGTTTG-A-AGT 607
Query 649 TATG-AT-TCAGTTAGGTATCTTGATCTGAGTAAATCGCTGCACTTGAGGATATTGGATA 706
| || || ||| | | ||||||| |||||||||||||||||| ||||| | |||||| |
Sbjct 608 TTTGTATGTCACTCAAGTATCTTAATCTGAGTAAATCGCTGCGCTTGACAAGATTGGAGA 667
Query 707 TAGATTTC-T--CCTCtttttttAG-A--AG-GC---CTATAAATATTGTGGCGCCCCAT 756
|||| | | ||| | || || | | || |||| | || |||||||| ||
Sbjct 668 TAGAACGCATATCCTATATTCG-AGCACCAATGCTGTCTATGCAGATCGTGGCGCCATAT 726
Query 757 ATCCATTATTTGAGATTGAGAAACTCTGAGGCACAATGTACTTTAGTTGATGTCTCCTCT 816
||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||| |||
Sbjct 727 ATCCATTATTTGAGATTGAGAGACTCTGAGGCACACTGCACTTTCGTTGATGTCTCTTCT 786
Query 817 TTAACTGAAGCTAAAGTAGACATTAGCTA-TATCGAACC-AGGTTGCTGTTATTAC-AGT 873
||||| |||||||| || ||| ||||| | | || | || || ||||||| | | |
Sbjct 787 TTAACAGAAGCTAATGTCGACGTTAGC-ACTTTCCATCCTAGAAC-CTGTTATCATGA-T 843
Query 874 TTTCAGCTCTT-GAAGCCTGATGTTCTTCAAGGT-ATAGTGCAAGCAATGCTAGAAAA-G 930
||| | | ||| || ||| ||| ||||| || | || |||||| |||||||| |||| |
Sbjct 844 TTTGACCCCTTAGAC-CCTCATGATCTTCTAG-TCATGGTGCAAACAATGCTA-AAAACG 900
Query 931 TTTCA-AAACGTAGAGAAGCTTACTTTTGGGGTTAACTTT-CTTCAGATGTTATCTCTTG 988
||||| ||| ||||||||||||||||| |||||||| ||| |||||||||||||| |||
Sbjct 901 TTTCAGAAA-GTAGAGAAGCTTACTTTGGGGGTTAA-TTTACTTCAGATGTTATCACTTT 958
Query 989 CCGAA-ATCTGT-GATATTCCTTTTCCGATGCTCAAAG-TCGAAGTTTTGATTCTTGAAA 1045
|| || ||| | | | |||| || |||||||| |||| || || ||||| ||||||||
Sbjct 959 CC-AAGATCCCTAG-TCTTCCATTGCCGATGCT-AAAGGTCAAAACTTTGACTCTTGAAA 1015
Query 1046 CGATGATTGTTCCG-TCTGTCATTCCTGGTATAGCAA-AGCTGTTACAAAACTCACCTGG 1103
| |||||| | ||| ||||| |||||||||| |||| | ||| ||||||||| ||||||
Sbjct 1016 CAATGATTAT-CCGATCTGTGGTTCCTGGTATTGCAAGA-CTGCTACAAAACTTACCTGG 1073
Query 1104 AGTGAAGA 1111
| | ||||
Sbjct 1074 ATTAAAGA 1081
> AT5G02920.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:680541-681777 FORWARD LENGTH=1118
Length=1118
Score = 488 bits (264), Expect = 5e-137
Identities = 646/818 (79%), Gaps = 75/818 (9%)
Strand=Plus/Plus
Query 7 ATGGAAGAGGAAGACCACGCCA-CTGTCGCTGTACGAAACCCTAGCCACCGTTTTGAACG 65
|||||||||||||||||||||| || | |||||| |||||||||||||||||||||| ||
Sbjct 1 ATGGAAGAGGAAGACCACGCCACCT-TTGCTGTAGGAAACCCTAGCCACCGTTTTGATCG 59
Query 66 TCCCGTCAAAATCAAACGATCAAGAAGTGATTCAATCGATGGTGTAGACTCAATCAGCGA 125
| || || ||||| |||||| ||||||||||||| || || |
Sbjct 60 T-CC-TC-TAATCAGACGATC---AAGTGATTCAATC--------AG-------CA---A 95
Query 126 TCTACCAGACGCGGTTCTCCAACATATCTTCTCCTATATT-CC--GACAAAGTTCGCGAT 182
|||||| |||| |||| || |||||| |||||| |||| || ||| || || | |||
Sbjct 96 TCTACCCGACGAAATTCTTCACCATATCCTCTCCTTTATTCCCGAGACCAATTTAGTGAT 155
Query 183 CAGAACCTCCGTCTTGTCCAGGCGATGGAGACATGTATGGTCGGAGACACCTCATCTCTC 242
||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 156 CAGAACCTCGGTCTTGTCGAAACGATGGAGACATGTATGGTCCAAGACACCTCATCTCTC 215
Query 243 CTTTAAATGGCTCAGT-GTTTCCCC-AGAATCGGTAAACAAAACCCTAGCGAGCTACAAG 300
|||| ||||||| | | |||||||| | ||| | |||||||||||||||| ||||||| |
Sbjct 216 CTTTGAATGGCTTA-TGGTTTCCCCTA-AATTGATAAACAAAACCCTAGCCAGCTACACG 273
Query 301 GCTTCCAAAATCACGAGTTTTCATCTCTGTACCCGTTTAGCCAGC-ACG-GCTCATCACC 358
|||||||||||||||||||| |||||||||||| | ||| |||| ||| | | | ||
Sbjct 274 GCTTCCAAAATCACGAGTTTCCATCTCTGTACCAG-TTA--CAGCTACGAG-GC-TGGCC 328
Query 359 ATGTTAATAGCTGGATCGAGTTTGCAATGTCTCACAACGTGGATGATCTTTTTCTGGAGT 418
||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 329 ATGTTCATAGCTCGATCGAGTTTGCAATGTCTCACAACGTGGATAATCTTTCTCTGGCGT 388
Query 419 TCCGTGGTTTTCTCACAACGATGAATTACA-GTTTTCCAGATTTCTTCTACAGCAATTCC 477
|| || |||||| ||| || || | ||| |||| || ||||||||||||| || ||
Sbjct 389 TCAGTAGTTTTC-CAC--CG-TGTA--ACAAGTTT-CCTGATTTCTTCTACACCAGCTCT 441
Query 478 TCTCTAAAGA-ACCTCATAGTAGACTCACGATGTAATGAGAT-GATTCCCAGATGCACCG 535
||||||||| | || ||| || ||| | | || | || |||||| |||| |
Sbjct 442 TCTCTAAAGCGAG-TCG-AGTTGA-----GATCTGCT-AGTTTGACTCCCAGTTGCATTG 493
Query 536 TGTCTTGGACGTCACTAAAGTACTTGTCTTTGAGCTGTTGTGAA-CTCTCTGATGAATCC 594
|||||||||| ||||||| | |||||||||||| | | ||| || ||||| ||| |||||
Sbjct 494 TGTCTTGGACCTCACTAAGGGACTTGTCTTTGACCCGGTGT-AATCTCTCGGATAAATCC 552
Query 595 TTTCTTAAGATTCTGTCTGGTTGTCCAATCCTGGAAACCTTGAGATTGTATAGTTATG-- 652
|||||||||||||||||||||||||||||||| |||| |||||| ||| | |||| ||
Sbjct 553 TTTCTTAAGATTCTGTCTGGTTGTCCAATCCTCGAAAGCTTGAGTTTG-A-AGTTTTGTG 610
Query 653 ATTCAGTTAGGTATCTTGATCTGAGTAAATCGCTGCACTTGAGGATATTGGATATAGATT 712
| ||| | | ||||||||||||||||||||| |||| ||||| | |||||| |||||
Sbjct 611 AGTCACTCAAGTATCTTGATCTGAGTAAATCACTGCGCTTGACAAGATTGGAGATAGAAC 670
Query 713 TC---TCCTCtttttttAGAAG----GC---CTATAAATATTGTGGCGCCCCATATCCAT 762
| |||| |||| |||| || |||| | || |||||||| ||||| |||
Sbjct 671 GCAGATCCTGTTTTCG-AGAACCAATGCAGTCTATGCAGATCGTGGCGCCACATATTCAT 729
Query 763 TATTTGAGATTGAGAAACTCTGAGGCACAATGTACTTT 800
||||||||||||||| ||||||||||||| || |||||
Sbjct 730 TATTTGAGATTGAGAGACTCTGAGGCACACTGCACTTT 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5