BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892214
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79640.1 | Symbols: | Protein kinase superfamily protein | ... 355 1e-97
> AT1G79640.1 | Symbols: | Protein kinase superfamily protein
| chr1:29966913-29971599 REVERSE LENGTH=2276
Length=2276
Score = 355 bits (192), Expect = 1e-97
Identities = 230/248 (93%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 2 TGACGACAAATCAAAGCCACCAGTTGTGCAGCAAAGAGGGCGTTTGTTTTAAAGTAACTT 61
||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1787 TGATGACAAATCAAAGCCGCCAGTTGTGCAGCAAAGAGGGC----GTTTTAAAGTAACTT 1842
Query 62 CTGAAAATCTCCACATCGAGAAGGTGGTGACTCCCTCTCCAATACTGCAAAATAGTCACA 121
||||||||||| ||||||||||||||||| | || || |||||||||||||| |||||||
Sbjct 1843 CTGAAAATCTCGACATCGAGAAGGTGGTGGCGCCTTCGCCAATACTGCAAAAGAGTCACA 1902
Query 122 ACATGCAGATGCTCTGCCAACATTCCTCTGCTTTTCTACCTCCCTCTGATGTCACATTAC 181
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 1903 GCATGCAGGTGCTCTGCCAACATTCCTCTGCTTCTCTACCTCACTCTGATGTCACATTGC 1962
Query 182 CAAAGCTAACCAGCTCATATGTTTACCCGCTGGTGTATCCAGTTCTGCAAACTAATATTT 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 CAAACCTAACCAGCTCATATGTTTACCCGCTGGTGTATCCAGTTCTGCAAACTAATATTT 2022
Query 242 TGGAAAGG 249
||||||||
Sbjct 2023 TGGAAAGG 2030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16437553923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5