BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892227

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   148    4e-35
  AT5G03495.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   137    9e-32


> AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966

 Score =  148 bits (80),  Expect = 4e-35
 Identities = 94/101 (93%), Gaps = 0/101 (0%)
 Strand=Plus/Plus

Query  227  CCTTCATGAGGATCGAGGGAGAAGATGTCGAAGAAAAGGCATTGCAACTTAGTGGAACTG  286
            |||||||| ||||| ||||||||| || |||||| |||||||||||||||||||||||||
Sbjct  215  CCTTCATGTGGATCAAGGGAGAAGGTGCCGAAGACAAGGCATTGCAACTTAGTGGAACTG  274

Query  287  ACGTTGGAGGATGGACTGCTATCGTTAAGCCTAAACCCAAA  327
            |||| ||||||||||||| ||||||||||||||||||||||
Sbjct  275  ACGTGGGAGGATGGACTGTTATCGTTAAGCCTAAACCCAAA  315


 Score =  145 bits (78),  Expect = 6e-34
 Identities = 90/96 (94%), Gaps = 0/96 (0%)
 Strand=Plus/Plus

Query  222  TGTTGCCTTCATGAGGATCGAGGGAGAAGATGTCGAAGAAAAGGCATTGCAACTTAGTGG  281
            |||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct  477  TGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGACAAGGCATTGCAACTTAGTGG  536

Query  282  AACTGACGTTGGAGGATGGACTGCTATCGTTAAGCC  317
            ||||||||||| ||||||||||| ||||||||||||
Sbjct  537  AACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC  572


> AT5G03495.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290

 Score =  137 bits (74),  Expect = 9e-32
 Identities = 95/105 (90%), Gaps = 1/105 (1%)
 Strand=Plus/Plus

Query  72   CCG-GAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATCAC  130
            ||| |||||| |  |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  346  CCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATCAC  405

Query  131  AAATATTTATGTTCCCAAAGACTTTGAAAGGAAAATCCTCAAGAG  175
            | ||||||||||||||| |||||||||||||   |||||||||||
Sbjct  406  ACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAAGAG  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5