BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892227 Length=579 Score E Sequences producing significant alignments: (Bits) Value AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 148 4e-35 AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 137 9e-32 > AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:869208-870855 REVERSE LENGTH=966 Length=966 Score = 148 bits (80), Expect = 4e-35 Identities = 94/101 (93%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 227 CCTTCATGAGGATCGAGGGAGAAGATGTCGAAGAAAAGGCATTGCAACTTAGTGGAACTG 286 |||||||| ||||| ||||||||| || |||||| ||||||||||||||||||||||||| Sbjct 215 CCTTCATGTGGATCAAGGGAGAAGGTGCCGAAGACAAGGCATTGCAACTTAGTGGAACTG 274 Query 287 ACGTTGGAGGATGGACTGCTATCGTTAAGCCTAAACCCAAA 327 |||| ||||||||||||| |||||||||||||||||||||| Sbjct 275 ACGTGGGAGGATGGACTGTTATCGTTAAGCCTAAACCCAAA 315 Score = 145 bits (78), Expect = 6e-34 Identities = 90/96 (94%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 222 TGTTGCCTTCATGAGGATCGAGGGAGAAGATGTCGAAGAAAAGGCATTGCAACTTAGTGG 281 |||||||||| |||||||||||||||||| || |||||| |||||||||||||||||||| Sbjct 477 TGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGACAAGGCATTGCAACTTAGTGG 536 Query 282 AACTGACGTTGGAGGATGGACTGCTATCGTTAAGCC 317 ||||||||||| ||||||||||| |||||||||||| Sbjct 537 AACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC 572 > AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:873331-875251 REVERSE LENGTH=1290 Length=1290 Score = 137 bits (74), Expect = 9e-32 Identities = 95/105 (90%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 72 CCG-GAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATCAC 130 ||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 346 CCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATCAC 405 Query 131 AAATATTTATGTTCCCAAAGACTTTGAAAGGAAAATCCTCAAGAG 175 | ||||||||||||||| ||||||||||||| ||||||||||| Sbjct 406 ACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAAGAG 450 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829717438 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5