BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892230
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03270.1 | Symbols: | lysine decarboxylase family protein |... 869 0.0
AT2G37210.2 | Symbols: | lysine decarboxylase family protein |... 152 4e-36
AT2G35990.1 | Symbols: | Putative lysine decarboxylase family ... 91.6 8e-18
> AT5G03270.1 | Symbols: | lysine decarboxylase family protein
| chr5:781870-783997 FORWARD LENGTH=690
Length=690
Score = 869 bits (470), Expect = 0.0
Identities = 566/610 (93%), Gaps = 16/610 (3%)
Strand=Plus/Plus
Query 1 ATGACGAAGAAACAAAGTTCAAGGTTTAAGAGCATTTGCGTCTTTTGTGGGAGTAGCAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28 ATGACGAAGAAACAAAGTTCAAGGTTTAAGAGCATTTGCGTCTTTTGTGGGAGTAGCAAT 87
Query 61 GGCAACAAAGCTAGTTATCAAGATGCAGCCATTGATTTGGCCAAAGAATTGGTGATGAGG 120
|| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 88 GGGAACAAAGCTAGTTATCAAGATGCAGCCATTGATTTGGCCAAGGAACTGGTGATGAGG 147
Query 121 AAGATTGATCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTCAAGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 AAGATTGATCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTCAAGCT 207
Query 181 GTTCATGATGGTGGTCGTCATGTTATTGGAGTCATCCCAAAGCTCCTCATGTTGCAAGAG 240
|||||||||||||||||||| || | | || | || | | | || | ||
Sbjct 208 GTTCATGATGGTGGTCGTCA---TA----A-TAATAAC-AA--TAATGGTAATG-ATGA- 254
Query 241 TGCTC-TTTTTGTCTCTCTGTCAATGTCTCGCAAACAAACACAAAGATAACTGGAGAAAC 299
||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 255 TGCTCTTTTTTGTCACTCTGTCAATGTCTCGCAAACAAACTCAAAGTTAACTGGAGAAAC 314
Query 300 AGTAGGAGAAGTGAGGGAAGTTGCAGACATGCATCAGAGAAAAGCTGAGATGGCTAAGCA 359
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 315 AGTAGGAGAAGTGAAGGAAGTTGCAGACATGCATCAGAGAAAAGCTGTGATGGCTAAGCA 374
Query 360 TTCTGATGCTTTCATTACTTTGCCTGGTGGCTATGGTACACTAGAGGAGCTACTTGAAGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TTCTGATGCTTTCATTACTTTGCCTGGTGGCTATGGTACACTAGAGGAGCTACTTGAAGT 434
Query 420 GATAACTTGGGCACAACTTGGTATCCATAATAAACCGGTCGGTTTATTAAACGTTGATGG 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 435 GATAACTTGGGCACAACTTGGTATCCATGATAAACCGGTCGGTTTATTAAACGTTGATGG 494
Query 480 ATATTACGATGCATTGCTATCATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCC 539
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 495 ATATTACGATGCATTGCTGTTATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCC 554
Query 540 AACCGCTGGACATATTATCGTGTCCGCGCCAACCGCAAAAGAATTGTTTAAAAAATTGGA 599
||||||| ||||||||||||| || || |||||||||| ||| ||||||| |||||||||
Sbjct 555 AACCGCTCGACATATTATCGTATCTGCACCAACCGCAAGAGAGTTGTTTATAAAATTGGA 614
Query 600 G--GAATATG 607
| |||||||
Sbjct 615 GTTGAATATG 624
> AT2G37210.2 | Symbols: | lysine decarboxylase family protein
| chr2:15623991-15626938 REVERSE LENGTH=1086
Length=1086
Score = 152 bits (82), Expect = 4e-36
Identities = 180/225 (80%), Gaps = 15/225 (7%)
Strand=Plus/Plus
Query 14 AAAGTTCAAGGTTTAAG-AGCATTTGCGTCTTTTGTGGGAGTAG-CAATGGCAACAA-AG 70
|||| |||| | || || || || || ||||| ||||| || || ||| ||||| || ||
Sbjct 131 AAAG-TCAAAG-TTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAA-GGCAAGAAGAG 187
Query 71 CTAGTTATCAAGATGCAGCCATTGA-TTTGGCCAAAGAATTGGTGAT-GAGGAAGATTGA 128
| ||||| |||||||| || |||| | || ||| ||| |||| | ||||| |||||
Sbjct 188 C-AGTTACCAAGATGCTGCTGTTGACCTCGG-CAACGAACTGGT-TTCAAGGAATATTGA 244
Query 129 TCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTCAAGCTGTTCATGA 188
||| || ||||| || || |||||||| || ||||||||||| || ||||||||||||||
Sbjct 245 TCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGA 304
Query 189 TGGTGGTCGTCATGTTATTGGAGTCAT-CCCAA-AGCTCCTCATG 231
|||||||||||||||||||||| |||| ||||| | | |||||||
Sbjct 305 TGGTGGTCGTCATGTTATTGGAATCATTCCCAAGA-C-CCTCATG 347
> AT2G35990.1 | Symbols: | Putative lysine decarboxylase family
protein | chr2:15113955-15116776 FORWARD LENGTH=886
Length=886
Score = 91.6 bits (49), Expect = 8e-18
Identities = 168/225 (75%), Gaps = 10/225 (4%)
Strand=Plus/Plus
Query 6 GAAGAAACAAAGTTCAAGGTTTAAGAGCATTTGCGTCTTTTGTGGGAGTAGCAATGGCAA 65
||||| ||||| ||||| || | ||| || || ||||| || || || || |||||
Sbjct 119 GAAGAGACAAA-ATCAAGATTCAGGAGGATCTGTGTCTTCTGCGGAAGCAGTTCCGGCAA 177
Query 66 CAAAGCTAGTTATCAAGATGCAGC-CATTGATTTGGCCAAAGAATTGGT-GATGAGGAAG 123
|||| | | |||||| || || || | | | | ||| | || |||| || ||| ||
Sbjct 178 CAAAACCACTTATCACGACGCTGCTC-TCCAACTCGCCCACCAACTGGTGGA-GAGAAAC 235
Query 124 ATTGATCTT-GTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTCAAGCTGT 182
|| ||| || || ||||| ||||||||| | || |||||||| | | |||||||||||
Sbjct 236 ATCGAT-TTGGTGTATGGAGGAGGAAGCGTGGGGCTAATGGGTCTCATTTCTCAAGCTGT 294
Query 183 TCATGATGGTGGTCGTCATGTTATTGG-AGTCATCCCAAAG-CTC 225
|||||||||||||||||||||| |||| | |||| || ||| |||
Sbjct 295 TCATGATGGTGGTCGTCATGTTCTTGGGA-TCATTCCGAAGTCTC 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5