BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892253
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 346 1e-94
AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 268 3e-71
> AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966
Score = 346 bits (187), Expect = 1e-94
Identities = 279/321 (87%), Gaps = 15/321 (5%)
Strand=Plus/Plus
Query 1 ATGGAAGAATCAGCCATCAAAGGTCTGAAATTGCTGGAATTCAACGATAGTGGTGCAGAC 60
||||||||||| ||||| ||| ||||||| | ||||||||| ||||||| || ||
Sbjct 1 ATGGAAGAATCCGCCATTAAACGTCTGAAGTCGCTGGAATTGAACGATA---GT---GA- 53
Query 61 TCTCAAACTCACAGTAGCACTAGTACGGCTATTTCCGTTGAAGGATATAACACTACGCTT 120
| || ||||| |||||| |||||||||| ||||||||||||| ||||| |||||
Sbjct 54 --T--AA---ACAGT-CCACTAGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTT 105
Query 121 AAGGAGTATCCTCTCAGGCTCGCATTGGCAAAACATTTCGCTTCATGCGGAAAGATCACA 180
|||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||
Sbjct 106 AAGGAGTATCCTCTCAGGCTGGCGTTGACAAAACATTTCGCTTCATGCGGAGAGATCACA 165
Query 181 CAAATTTATGTTCCTAGAGACTTTAAAAAGAAACTCCTCAAGAGAGCCTCCTTCGTTTGG 240
|||||||||||||| |||||||||||||||||| |||||||||| | ||||||| | |||
Sbjct 166 CAAATTTATGTTCCAAGAGACTTTAAAAAGAAAATCCTCAAGAGTGTCTCCTTCATGTGG 225
Query 241 ATCGAGGGAGACGATGCCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACGTTGGAGGA 300
||| ||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 226 ATCAAGGGAGAAGGTGCCGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGA 285
Query 301 TGGACTGCTATCGTTAAGCCT 321
||||||| |||||||||||||
Sbjct 286 TGGACTGTTATCGTTAAGCCT 306
Score = 198 bits (107), Expect = 4e-50
Identities = 192/232 (83%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 94 TCCGTTGAAGGATATAACACTACGCTT-AAGGAGTATCCTCTCAG-GCTC-GCATTGGCA 150
|||||||| |||||| ||||| ||||| || |||||| |||| | |||| | |||| |
Sbjct 346 TCCGTTGAGGGATATGACACTTCGCTTCAA-AAGTATCTTCTC-GAGCTCATC-TTGGAA 402
Query 151 AAACATTTCGCTTCATGCGGAAAGATCACACAAATTTATGTTCCTAGAGACTTTAAAAAG 210
|||||||||| |||||||||| |||| | ||| |||||||||| | ||||| | ||| |
Sbjct 403 AAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTATGAAAGG 462
Query 211 AAACTCCTCAAGAGAGCCT-CCTTCGTT-TGGATCGAGGGAGACGATGCCGAAGAAAAGG 268
|||||||||| | | ||||| || ||||||||||||| | ||||||||| ||||
Sbjct 463 GGTGTCCTCAAGAGTG-TTGCCTTC-TTGAGGATCGAGGGAGAAGGTGCCGAAGACAAGG 520
Query 269 CATTGCAACTTAGTGGAACTGACGTTGGAGGATGGACTGCTATCGTTAAGCC 320
||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 521 CATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC 572
> AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290
Score = 268 bits (145), Expect = 3e-71
Identities = 266/325 (82%), Gaps = 6/325 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAATCAGCCATCAAAGGTCTGAAATTGCTGGAATTCAACGATAGTGGTGCAGAC 60
||||| ||||| |||||||||||| ||||||||||| |||| ||||| | ||||||| ||
Sbjct 227 ATGGACGAATCCGCCATCAAAGGTATGAAATTGCTGCAATTGAACGAGATTGGTGCAAAC 286
Query 61 TCTC-AAACTCACAGTAGCACTAGTACGGCTATTTCCGTTGAAGGATATAACACTACGCT 119
|||| ||| | | ||| | || | ||| |||||||| || |||||| |||||| ||
Sbjct 287 TCTCGAAA-GCCCCGTATCCCTTGGACGAAGATTTCCGTGGAGGGATATGACACTAGGC- 344
Query 120 TAAG-GAGTATCCTCTCAGGCTCGCATTGGCAAAACATTTCGCTTCATGCGGAAAGATCA 178
| | |||||| | ||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 345 TCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATCA 404
Query 179 CACAAATTTATGTTCCTAGAGACTTTAAAAAGAA-ACTCCTCAAGAGAGCCTCCTTCGTT 237
|||| ||||||||||| ||||||||| ||| | | |||||||||| | | ||||| |
Sbjct 405 CACATATTTATGTTCCCAGAGACTTTGAAAGGGGTA-TCCTCAAGAGTGTCGCCTTCATG 463
Query 238 TGGATCGAGGGAGACGATGCCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACGTTGGA 297
|| ||| | ||||| | || ||||||||||||||||| |||||||||||||||| |||
Sbjct 464 TGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAGTGGAACTGACGCGGGA 523
Query 298 GGATGGACTGCTATCGTTAAGCCTG 322
||||||||||| |||||||||||||
Sbjct 524 GGATGGACTGCAATCGTTAAGCCTG 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5