BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892255
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 538 3e-152
AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 451 4e-126
AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 65.8 6e-10
> AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966
Score = 538 bits (291), Expect = 3e-152
Identities = 519/623 (83%), Gaps = 40/623 (6%)
Strand=Plus/Plus
Query 93 CACGACGATTTCCGTTGAGGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGT 152
||||||||| |||||||||||||||||||||| ||||| |||||||| |||| | ||| |
Sbjct 336 CACGACGATCTCCGTTGAGGGATATGACACTTCGCTTCAAAAGTATCTTCTCGAGCTCAT 395
Query 153 GTTGGAAAAACATTTCGCTTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTT 212
|||||||||||||||| ||||||||||||||| | | || ||||||| ||||||||||
Sbjct 396 CTTGGAAAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTA 455
Query 213 TGAAAGGGGTATCCTCAAGAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGA 272
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 456 TGAAAGGGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGA 515
Query 273 AAAGGCATTGCAACTTAGTGGAACTGACGTCGGAGGATGGACTGCTATCGTTAAGCCTGC 332
||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 516 CAAGGCATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC--- 572
Query 333 ACCGTCGCAGAAAGTATTC-ATGGATGATCCTTGGTATGCTGGTCCTAGGTGTGCTGCTG 391
| || | |||| ||||| ||| || || ||| | |||| ||| | || ||
Sbjct 573 A---TC-C-GAAA-TATTCTATG-ATAATTCTTCGCGTGCT---CCT-GCAA--CTACTC 619
Query 392 CTCCCGCCGATACCAAAACACACATGATCCGCGTTACCGGATATGACACTTCGCTTCCTA 451
|| || || |||||| ||||| | |||| ||||| ||||||||| |||||||||||
Sbjct 620 CTGAGGC--AT-CCAAAATACACAGGTTCCGTGTTACGGGATATGACGCTTCGCTTCCTG 676
Query 452 AGATTGATATGCAGATCGCGCTGTATAAACATTTCTCCTCATGTGGATCA-ATCTGGAAA 510
|||||||||| ||||| || |||| |||||||||||| ||||||||| | |||||| ||
Sbjct 677 AGATTGATATCCAGATGGCTCTGTGTAAACATTTCTCTTCATGTGGAG-AGATCTGGCAA 735
Query 511 GTTATAGTTCTCTCTAGCGGTGCAGCTTTTATTTATCTT-GAAGGAGAAAGATGTGTAGA 569
|||| |||||||||||| | ||||||| ||| |||| || |||||||||||||||||
Sbjct 736 GTTACAGTTCTCTCTAG---TACAGCTTTCGTTTCTCTTAGA-GGAGAAAGATGTGTAGA 791
Query 570 CAAGGCGCTGGAACTAAGTGGACGGAACATGGGAGGATCGACTCTTGTAGTT---GAACC 626
|||||||||||||||||||||| | |||||||||| | ||||||||||||| |||||
Sbjct 792 CAAGGCGCTGGAACTAAGTGGATGTAACATGGGAGAAAGGACTCTTGTAGTTAATGAACC 851
Query 627 TGTTGTGCCGCGACCCGATA-TCTTaaaaa-aaaGAAGGC--CGCTCGCCTGCACTACTA 682
||||||||||| |||||| | ||||||||| ||| |||| ||| | | |||||||| |
Sbjct 852 TGTTGTGCCGCAACCCGA-ACTCTTAAAAAGAAA-AAGGGTACGC-CAC-TGCACTACCA 907
Query 683 CTGGCTATACT-CTCCCAAGTAC 704
||||||||| | | |||| ||||
Sbjct 908 CTGGCTATA-TGCCCCCAGGTAC 929
Score = 268 bits (145), Expect = 4e-71
Identities = 216/249 (87%), Gaps = 10/249 (4%)
Strand=Plus/Plus
Query 87 CACCAGCACGACGATTTCCGTTGAGGGATATGACACTTGGCTTCGAA--AGTATCCTCTC 144
||| |||||| | |||| |||||| ||||||||||||| |||| || |||||||||||
Sbjct 63 CACTAGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTT--AAGGAGTATCCTCTC 120
Query 145 AAACTCGTGTTGGA-AAAACATTTCGCTTCATGCGGAGAGATCACA-AATATTTATGTAC 202
| || | ||| || ||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 121 AGGCTGGCGTT-GACAAAACATTTCGCTTCATGCGGAGAGATCACACAA-ATTTATGTTC 178
Query 203 CCACAGACTTTGAAAGGGGTATCCTCAAGAGTGT-TGCCTTCATGAGGATCGAGGGAGAA 261
| | ||||||| ||| | |||||||||||||| | |||||||| ||||| ||||||||
Sbjct 179 CAAGAGACTTTAAAAAGAAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAA 237
Query 262 GGTGCCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACGTCGGAGGATGGACTGCTATC 321
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 238 GGTGCCGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATC 297
Query 322 GTTAAGCCT 330
|||||||||
Sbjct 298 GTTAAGCCT 306
> AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290
Score = 451 bits (244), Expect = 4e-126
Identities = 631/806 (78%), Gaps = 74/806 (9%)
Strand=Plus/Plus
Query 1 ATGGACGAAACCGCTATCAAAGGTCTGAAATTACTGGAATTGAACGATAGTGGTTCAGAC 60
||||||||| |||| ||||||||| ||||||| ||| |||||||||| | |||| || ||
Sbjct 227 ATGGACGAATCCGCCATCAAAGGTATGAAATTGCTGCAATTGAACGAGATTGGTGCAAAC 286
Query 61 TCTGGTGAATCAAACTGTTGTAGTTGCACC-AGCACGACGATTTCCGTTGAGGGATATGA 119
||| | | || | ||| | | || | |||| ||||||||| |||||||||||
Sbjct 287 TCT--CG-A--AAGC-CCCGTA--T-C-CCTTGGACGAAGATTTCCGTGGAGGGATATGA 336
Query 120 CACTTGGCTTCGAAAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGCTTCATGCGG 179
|||| |||| || ||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 337 CACTAGGCTCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGCTTCATGCGG 396
Query 180 AGAGATCACAAATATTTATGTACCCACAGACTTTGAAAGGGGTATCCTCAAGAGTGTTGC 239
| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 397 AAAGATCACACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAAGAGTGTCGC 456
Query 240 CTTCATGAGGATCGAGGGAGAAGGTGCCGAAGAAAAGGCATTGCAACTTAGTGGAACTGA 299
||||||| | ||| | |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 457 CTTCATGTGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAGTGGAACTGA 516
Query 300 CGTCGG-AGGATGGACTGCTATCGTTAAGCCTGCAC-CGTCGCAGAAAGTATTCATGGAT 357
|| ||| |||||||||||| |||||||||||||||| | | |||||||| | ||||||||
Sbjct 517 CG-CGGGAGGATGGACTGCAATCGTTAAGCCTGCACTC-TGGCAGAAAGAAATCATGGAT 574
Query 358 GATCCTTGGTATGCTGGTCCTAGGTGTGCTGCTGCTCCCGCCGATACCAAAACACACATG 417
|||||| || |||| || | ||| || | | ||| |||||| |
Sbjct 575 ---CCTTGG----CT--TCCT-GG----CA--TGC-CCAAACT-TG--AAA-CACACAGG 613
Query 418 ATCCGCGTTACCGGATATGACACTTC-GCTTCCTAAGATTGATATGCAGATCGCGCT-GT 475
|||||||||| ||||||||||||| | |||||||||||||||| ||||| || || ||
Sbjct 614 GTCCGCGTTACGGGATATGACACTTGTG-TTCCTAAGATTGATATCCAGATGGC-CTTGT 671
Query 476 ATAAACATTTCTCCTCATGTGGATCAA-TCTGGAAAGTTATAGTTCT-CTCTAGCGGTGC 533
| |||||||||| ||||||||| | || | ||||| | ||||| | |||||||| |
Sbjct 672 GTGAACATTTCTCTTCATGTGGAG-AGGTCACGCAAGTTGTGGTTCTGC-CTAGCGGTTC 729
Query 534 AGCTTTTATTTATCTTGAAGGAGAAAGATGTGTAG-ACAAGGCGCTGGAACTAAGTGGAC 592
|| || ||||||||| ||||||||||||||| || |||||||||| |||||| ||||
Sbjct 730 AGGTTCCATTTATCTTCAAGGAGAAAGATGTG-AGGACAAGGCGCTTCAACTAAATGGAT 788
Query 593 GGAACATGGGAGGA-TCGACTCTTGTAGTTGAACCTGTTGTGCCGCGA-CCCGAT-ATCT 649
| || ||||||||| | || ||||||||||||| ||||| || || ||||| | ||
Sbjct 789 GTAAAATGGGAGGAAT-GAATCTTGTAGTTGAATCTGTTTTGATA-GAACCCGAAGACCT 846
Query 650 Taaaaaa-aaGAAGG-C-CGC--TCG-C-CTGC--ACTA-C--TACTGGCTATACTCTCC 697
|||||| || |||| | ||| || | | || ||| | |||||||||||| | ||
Sbjct 847 AAAAAAAGAA-AAGGGCGCGCCATCATCAC-GCCTACTGGCCATACTGGCTATACGC-CC 903
Query 698 C-AAGTACTTTACTTG-A-GGTGGCTaagaagaagaagaagaagatggagacagagatgg 754
|||| |||| | | | || | | || ||||||||||||||||||| |||||||
Sbjct 904 TTAAGTTGTTTA-T-GCAAGGCGTATGAGCTTAAGAAGAAGAAGATGGAGATGGAGATGG 961
Query 755 agatggagaagg---agaaggagaag 777
||||||||| || ||||| |||||
Sbjct 962 AGATGGAGATGGGTGAGAAGAAGAAG 987
> AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21801143-21802787 FORWARD LENGTH=1075
Length=1075
Score = 65.8 bits (35), Expect = 6e-10
Identities = 40/42 (95%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 553 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 593
||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5