BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892256
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 791 0.0
> AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290
Score = 791 bits (428), Expect = 0.0
Identities = 610/694 (88%), Gaps = 27/694 (4%)
Strand=Plus/Plus
Query 1 ATGGACGAATCCGCCATCAAAGGTCTGAAATTGCTGGAATTGAACGATAGTGGTGCAGTC 60
|||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||| |
Sbjct 227 ATGGACGAATCCGCCATCAAAGGTATGAAATTGCTGCAATTGAACGAGATTGGTGCAAAC 286
Query 61 TCTCGAAAACCGCGTA------AGACGACGATTTCCGTTGAGGGATATGACACTAGGCTC 114
|||||||| || |||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 287 TCTCGAAAGCCCCGTATCCCTTGGACGAAGATTTCCGTGGAGGGATATGACACTAGGCTC 346
Query 115 CGTGAGTATACTCTCAAGCTCGCGTTGGAAAAACATTTCGCTTCATGCGGAAAGATTGCA 174
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 347 CGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATCACA 406
Query 175 -ACTATTTATGTTCCCAGAGACTATAAAAGGGGTATTCTCAAGAGTGTCACCTTCATGTG 233
| |||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||
Sbjct 407 CA-TATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAAGAGTGTCGCCTTCATGTG 465
Query 234 GATCAAGGGAGACGATGCCGAAGAAAAGGCATTGCAGCTTAGTGGAACTGACGTCGG-AG 292
||||| ||||| | || ||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 466 TATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAGTGGAACTGACG-CGGGAG 524
Query 293 GATGGACTGCTCTCGTTAAGCCTGCACCCTCGCAGAAAGACATCATGGATCCTTGG-TGT 351
|||||||||| ||||||||||||||| || ||||||||| ||||||||||||||| | |
Sbjct 525 GATGGACTGCAATCGTTAAGCCTGCACTCTGGCAGAAAGAAATCATGGATCCTTGGCT-T 583
Query 352 CCTG-CTATGCTATCCAAACATGAAACACAGAGGGTCCGCGTTACCGGATATGACACTTG 410
|||| | |||| |||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 584 CCTGGC-ATGC---CCAAACTTGAAACACACAGGGTCCGCGTTACGGGATATGACACTTG 639
Query 411 -GCTTCCTGAGATTGATATCCAGATTGCCTTGTGTGAACATTTCTCTTCCTGTGGAGAGG 469
| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 640 TG-TTCCTAAGATTGATATCCAGATGGCCTTGTGTGAACATTTCTCTTCATGTGGAGAGG 698
Query 470 TCACGCAAGTTATGGTTCTCCCTTGCGGTTCAGGTTCCATTTATCTTGAAGAAGAAAGAT 529
||||||||||| ||||||| ||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 699 TCACGCAAGTTGTGGTTCTGCCTAGCGGTTCAGGTTCCATTTATCTTCAAGGAGAAAGAT 758
Query 530 GTGAAGACAAGGCGCTTAAACTAAATGGGTGTAAAATGGGAGGAATGAATCTTGTAGTTG 589
|||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 759 GTGAGGACAAGGCGCTTCAACTAAATGGATGTAAAATGGGAGGAATGAATCTTGTAGTTG 818
Query 590 AACCTGTTAAGGCGCGA-CCCGAAGACTTaaaaaaaaGAAAGGGGCGC-CC--C-TGCAC 644
|| ||||| | || ||||||||| |||||||| |||| |||||| || | | |||
Sbjct 819 AATCTGTTTTGATA-GAACCCGAAGACCTAAAAAAA-GAAAAGGGCGCGCCATCAT-CAC 875
Query 645 TACTACTGGCTATACTGGCTATATGCCCTTAAGT 678
|||||||| |||||||||||| ||||||||||
Sbjct 876 GCCTACTGGCCATACTGGCTATACGCCCTTAAGT 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5