BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892257
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin sy... 337 3e-92
> AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:15155879-15159589 FORWARD
LENGTH=2126
Length=2126
Score = 337 bits (182), Expect = 3e-92
Identities = 226/247 (91%), Gaps = 4/247 (2%)
Strand=Plus/Plus
Query 1 ATGGACCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATAACAAATGCAAA 60
||||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 1300 ATGGATCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATGAGAGGTGCAAA 1359
Query 61 AAGGAACTTG-AAGCTATTGGAAAACAATACCCATTTAAACCTTTGAAGTTTCTTG-AAA 118
|| ||||| | ||||| ||||||| |||||||||||| |||||||||||||||| |||
Sbjct 1360 AAAGAACT-GCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAA 1418
Query 119 AGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGGAGA 178
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1419 A-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGG 1477
Query 179 TTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTACTGG 238
|||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |||
Sbjct 1478 TTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTATTGG 1537
Query 239 AAAAGTA 245
|||||||
Sbjct 1538 AAAAGTA 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11159440278
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5