BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892258
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 569 1e-161
AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 464 5e-130
AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 58.4 1e-07
> AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966
Score = 569 bits (308), Expect = 1e-161
Identities = 526/625 (84%), Gaps = 40/625 (6%)
Strand=Plus/Plus
Query 132 CACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGT 191
||||||| | |||||||||||||||||||||| ||||| |||||||| |||| | ||| |
Sbjct 336 CACGACGATCTCCGTTGAGGGATATGACACTTCGCTTCAAAAGTATCTTCTCGAGCTCAT 395
Query 192 GTTGGAAAAACATTTCGCTTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTT 251
|||||||||||||||| ||||||||||||||| | | || ||||||| ||||||||||
Sbjct 396 CTTGGAAAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTA 455
Query 252 TGAAAGGGGTATCCTCAAGAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGA 311
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 456 TGAAAGGGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGA 515
Query 312 AAAGGCATTGCAACTTAGTGGAACTGACGTCGGAGGATGGACTGCTATCGTTAAGCCTGC 371
||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 516 CAAGGCATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC--- 572
Query 372 ACCGTCGCAGAAAGTATTC-ATGGATGATCCTTGGTATGCTGGTCCTAGGTGTGCTGCTG 430
| || | |||| ||||| ||| || || ||| | |||| ||| | | ||
Sbjct 573 A---TC-C-GAAA-TATTCTATG-ATAATTCTTCGCGTGCT---CCT-G-----CAACTA 616
Query 431 CTCCCGCGG-ATACCAAAATACACAGGATCCGCGTTACCGGATATGACACTTCGCTTCCT 489
|||| | || || |||||||||||||| |||| ||||| ||||||||| |||||||||||
Sbjct 617 CTCCTGAGGCAT-CCAAAATACACAGGTTCCGTGTTACGGGATATGACGCTTCGCTTCCT 675
Query 490 GAGATTGATATGCAGATCGCGCTGTGTAAACATTTCTCCTCATGTGGATACG-TCTCGAA 548
||||||||||| ||||| || ||||||||||||||||| ||||||||| | | ||| | |
Sbjct 676 GAGATTGATATCCAGATGGCTCTGTGTAAACATTTCTCTTCATGTGGAGA-GATCTGGCA 734
Query 549 AGTTATAGTTCTCTCTAGCGGTGCAGCTTTCCTGTGTCTTAAAGGAGAAAGATGTGTAGA 608
||||| |||||||||||| | |||||||| | | ||||| ||||||||||||||||||
Sbjct 735 AGTTACAGTTCTCTCTAG---TACAGCTTTCGTTTCTCTTAGAGGAGAAAGATGTGTAGA 791
Query 609 CAAGGCGCTGGAACTAAGTCGATGTAACATGGGAGGAAGGACTCTTGTAGTT---GAACC 665
||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 792 CAAGGCGCTGGAACTAAGTGGATGTAACATGGGAGAAAGGACTCTTGTAGTTAATGAACC 851
Query 666 TGTTGTGCCGCGACCCGATA-TCCTaaaaa-aaaGAAGGC--CGCTCGCCTGCACTACTA 721
||||||||||| |||||| | || |||||| ||| |||| ||| | | |||||||| |
Sbjct 852 TGTTGTGCCGCAACCCGA-ACTCTTAAAAAGAAA-AAGGGTACGC-CAC-TGCACTACCA 907
Query 722 CTGGCTACACT-CTCCCAAGTACAT 745
||||||| | | | |||| ||||||
Sbjct 908 CTGGCTATA-TGCCCCCAGGTACAT 931
Score = 261 bits (141), Expect = 7e-69
Identities = 212/245 (87%), Gaps = 10/245 (4%)
Strand=Plus/Plus
Query 130 AGCACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAA--AGTATCCTCTCAAAC 187
|||||| | ||| |||||| ||||||||||||| |||| || |||||||||||| |
Sbjct 67 AGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTT--AAGGAGTATCCTCTCAGGC 124
Query 188 TCGTGTTGGA-AAAACATTTCGCTTCATGCGGAGAGATCACA-AATATTTATGTACCCAC 245
| | ||| || ||||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 125 TGGCGTT-GACAAAACATTTCGCTTCATGCGGAGAGATCACACAA-ATTTATGTTCCAAG 182
Query 246 AGACTTTGAAAGGGGTATCCTCAAGAGTGT-TGCCTTCATGAGGATCGAGGGAGAAGGTG 304
||||||| ||| | |||||||||||||| | |||||||| ||||| ||||||||||||
Sbjct 183 AGACTTTAAAAAGAAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAAGGTG 241
Query 305 CCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACGTCGGAGGATGGACTGCTATCGTTA 364
||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 242 CCGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATCGTTA 301
Query 365 AGCCT 369
|||||
Sbjct 302 AGCCT 306
> AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290
Score = 464 bits (251), Expect = 5e-130
Identities = 510/628 (81%), Gaps = 46/628 (7%)
Strand=Plus/Plus
Query 92 acgatagtggtgCAGACTCTC-AAACTCCCCGTATCTCC-AGCACGACGGTTTCCGTTGA 149
|||| | ||||||| |||||| ||| ||||||||| || | |||| | ||||||| ||
Sbjct 270 ACGAGATTGGTGCAAACTCTCGAAA-GCCCCGTATC-CCTTGGACGAAGATTTCCGTGGA 327
Query 150 GGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGC 209
||||||||||||| |||| || ||||| | |||| |||||||||||||||||||||||
Sbjct 328 GGGATATGACACTAGGCTCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGC 387
Query 210 TTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTTTGAAAGGGGTATCCTCAA 269
|||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 388 TTCATGCGGAAAGATCACACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAA 447
Query 270 GAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGAAAAGGCATTGCAACTTAG 329
|||||| ||||||||| | ||| | |||||||||| ||||||||||||||||| |||||
Sbjct 448 GAGTGTCGCCTTCATGTGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAG 507
Query 330 TGGAACTGACGTCGG-AGGATGGACTGCTATCGTTAAGCCTGCAC-CGTCGCAGAAAGTA 387
||||||||||| ||| |||||||||||| |||||||||||||||| | | |||||||| |
Sbjct 508 TGGAACTGACG-CGGGAGGATGGACTGCAATCGTTAAGCCTGCACTC-TGGCAGAAAGAA 565
Query 388 TTCATGGATGATCCTTGGTATGCTGGTCCTAGGTGTGCTGCTGCTCCCGCGGATACCA-A 446
|||||||| |||||| || |||| || | ||| || | || |
Sbjct 566 ATCATGGAT---CCTTGG----CT--TCCT-GG----CA--TGC-CCA----A-ACTTGA 603
Query 447 AATACACAGGATCCGCGTTACCGGATATGACACTTC-GCTTCCTGAGATTGATATGCAGA 505
|| ||||||| |||||||||| ||||||||||||| | ||||| |||||||||| ||||
Sbjct 604 AACACACAGGGTCCGCGTTACGGGATATGACACTTGTG-TTCCTAAGATTGATATCCAGA 662
Query 506 TCGCGCT-GTGTAAACATTTCTCCTCATGTGGATACGTCTCGAAAGTTATAGTTCT-CTC 563
| || || |||| |||||||||| ||||||||| | ||| || ||||| | ||||| | |
Sbjct 663 TGGC-CTTGTGTGAACATTTCTCTTCATGTGGAGAGGTCACGCAAGTTGTGGTTCTGC-C 720
Query 564 TAGCGGTGCAGCTTTCC-TGTGTCTTAAAGGAGAAAGATGTGTAG-ACAAGGCGCTGGAA 621
||||||| ||| || || | | |||| ||||||||||||||| || |||||||||| ||
Sbjct 721 TAGCGGTTCAGGTT-CCATTTATCTTCAAGGAGAAAGATGTG-AGGACAAGGCGCTTCAA 778
Query 622 CTAAGTCGATGTAACATGGGAGGAAGGACTCTTGTAGTTGAACCTGTTGTGCCGCGA-CC 680
|||| | ||||||| |||||||||| || ||||||||||||| ||||| || || ||
Sbjct 779 CTAAATGGATGTAAAATGGGAGGAATGAATCTTGTAGTTGAATCTGTTTTGATA-GAACC 837
Query 681 CGAT-ATCCTaaaaaaa-aGAAGGCCGC 706
||| | |||||||||| | |||| |||
Sbjct 838 CGAAGA-CCTAAAAAAAGAAAAGGGCGC 864
> AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21801143-21802787 FORWARD LENGTH=1075
Length=1075
Score = 58.4 bits (31), Expect = 1e-07
Identities = 40/44 (91%), Gaps = 2/44 (5%)
Strand=Plus/Plus
Query 592 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTCGATGTA 634
||| ||| ||||||||||||||||||||||||||||| || |||
Sbjct 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACGTA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5