BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892260
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03220.1 | Symbols: | Mediator complex, subunit Med7 | chr5... 802 0.0
AT5G03500.1 | Symbols: | Mediator complex, subunit Med7 | chr5... 785 0.0
> AT5G03220.1 | Symbols: | Mediator complex, subunit Med7 | chr5:767489-768857
REVERSE LENGTH=736
Length=736
Score = 802 bits (434), Expect = 0.0
Identities = 478/500 (96%), Gaps = 0/500 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACAGCTACGTATCCACCTCCTCCACCGTATTACAGACTCTACAAGGATTACTCA 60
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 102 ATGGCTACAGCTACGTATCCGCCTCCTCCACCATATTACAGACTCTACAAGGATTACTCA 161
Query 61 GAAAACCCTAATTCTGCTCCTGAACCTCATCCTCCCATTGAAGGCACCTACGTTTGTTTC 120
|||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 162 GAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTACGTCTGTTTT 221
Query 121 GGAGGCAACTATACTACGGAGGATGTTCTTCCGAGCTTAGAAGAACAAGGAGTGCCTCAA 180
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 222 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 281
Query 181 CTTTATCCCAAAGATTCTAATGTTGATTATAAGAAGGAACTCAGGTCACTGAATAGAGAA 240
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 282 CTTTATCCCAAAGATTCTAATCTTGATTACAAGAATGAACTCAGGTCACTGAATAGAGAA 341
Query 241 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGATAGACCTTCTCAATATGCA 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 342 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGACAGACCTTCTCAATATGCG 401
Query 301 AAGAGGATTGGTGAAATTTCTTCAATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 402 AAGAGGATTGGTGAAATTTCTTCTATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 461
Query 361 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 521
Query 421 AAACAAGCTGTGGAGGACATTAAGAGGAGAAGAGAAGAAGCACAACGACTTCTAAAGGAT 480
|||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 522 AAACAAGCTGTGGAAGACATTAAAAGAAGAAGAGAAGAAGCACAGCGACTTCTAAAGGAT 581
Query 481 GCTTTCGTCACTTTGGATGG 500
|||| | ||||||| |||||
Sbjct 582 GCTTACCTCACTTTAGATGG 601
> AT5G03500.1 | Symbols: | Mediator complex, subunit Med7 | chr5:876521-878336
REVERSE LENGTH=885
Length=885
Score = 785 bits (425), Expect = 0.0
Identities = 475/500 (95%), Gaps = 0/500 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACAGCTACGTATCCACCTCCTCCACCGTATTACAGACTCTACAAGGATTACTCA 60
|||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 227 ATGGCTACAGCTACATATCCACCTCCTCCTCCATATTACAGACTCTACAAGGATTTCTCA 286
Query 61 GAAAACCCTAATTCTGCTCCTGAACCTCATCCTCCCATTGAAGGCACCTACGTTTGTTTC 120
|||||| || |||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 287 GAAAACACTGATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTACGTCTGTTTT 346
Query 121 GGAGGCAACTATACTACGGAGGATGTTCTTCCGAGCTTAGAAGAACAAGGAGTGCCTCAA 180
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 347 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 406
Query 181 CTTTATCCCAAAGATTCTAATGTTGATTATAAGAAGGAACTCAGGTCACTGAATAGAGAA 240
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 407 CTTTATCCAAAAGATTCTAATCTTGATTACAAGAAGGAACTCAGGTCACTGAATAGAGAA 466
Query 241 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGATAGACCTTCTCAATATGCA 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 467 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGACAGACCTTCTCAATATGCG 526
Query 301 AAGAGGATTGGTGAAATTTCTTCAATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 360
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 527 AAGAGAATTGGTGAAATTTCTTCAATCTTCAAGAACTTGCATCACCTTCTCAATTCCTTG 586
Query 361 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 646
Query 421 AAACAAGCTGTGGAGGACATTAAGAGGAGAAGAGAAGAAGCACAACGACTTCTAAAGGAT 480
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 647 AAACAAGCTGTGGAAGACATTAAGAGGAGGAGAGAAGAAGCACAAGGACTTCTTAAGGAT 706
Query 481 GCTTTCGTCACTTTGGATGG 500
|||||||||||||| |||||
Sbjct 707 GCTTTCGTCACTTTAGATGG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24062156413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5