BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892263
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03530.1 | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, ... 1114 0.0
AT3G09910.1 | Symbols: ATRAB18C, ATRABC2B, RABC2b | RAB GTPase ... 580 4e-165
> AT5G03530.1 | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A,
RABC2A | RAB GTPase homolog C2A | chr5:885522-887390 REVERSE
LENGTH=1181
Length=1181
Score = 1114 bits (603), Expect = 0.0
Identities = 623/633 (98%), Gaps = 0/633 (0%)
Strand=Plus/Plus
Query 1 ATGGGATCTTCTTCTGGGCAAAGTGGATACGATCTGTCTTTTAAGATCTTGTTGATTGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 ATGGGATCTTCTTCTGGGCAAAGTGGATACGATCTGTCTTTTAAGATCTTGTTGATTGGT 389
Query 61 GATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTGAGCTTCATTTCCAGCTCCGTTGAAGAT 120
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 390 GATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTCAGCTTCATTTCTAGCTCCGTTGAAGAT 449
Query 121 CTTGCTCCTACCATTGGTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGA 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 CTTGCTCCTACTATTGGTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGG 509
Query 181 CTAAAACTCACAATCTGGGACACAGCTGGACAGGAACGGTTTAGAACACTGACGAGCTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 510 CTAAAACTCACAATCTGGGACACAGCTGGACAGGAACGGTTTAGAACACTGACAAGCTCT 569
Query 241 TACTATAGAGGCGCCCAAGGAATCATTCTTGTTTATGATGTGACGAGAAGGGAGACATTT 300
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 570 TACTACAGAGGCGCCCAAGGAATCATTCTCGTTTATGATGTGACGAGAAGGGAGACATTT 629
Query 301 ACAAACTTAGTAGATGTGTGGGGTAAGGAGATTGAGCTTTATTCCACAAACCAAGAATGT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 630 ACAAACTTAGTAGATGTGTGGGGTAAGGAGATTGAGCTTTACTCCACAAACCAAGAATGT 689
Query 361 GTAAGGATGCTCGTTGGGAACAAAGTCGATAGAGAATCTGAGAGAGGAGTAAGCAGAGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GTAAGGATGCTCGTTGGGAACAAAGTCGATAGAGAATCTGAGAGAGGAGTAAGCAGAGAA 749
Query 421 GAAGGGATTGCTTTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGCTAGAACT 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GAAGGGATTGCTCTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGCTAGAACT 809
Query 481 CGACAAAACGTGGAACAGTGTTTCGAAGAGTTGGCTTTGAAGATAATGGAGGTACCTAGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CGACAAAACGTGGAACAGTGTTTCGAAGAGTTGGCTTTGAAGATAATGGAGGTACCTAGT 869
Query 541 CTCTTGGAAGAAGGATCAAGTGCTGTGAAGAGAAACATCTTGAAGCAGAAACCAGAACAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 CTCTTGGAAGAAGGATCAAGTGCTGTGAAGAGAAACATCTTGAAGCAGAAACCAGAACAC 929
Query 601 CAGACTAATACTCAATCCAGCTGTTGCAGCTAG 633
|||||||||||||||||| ||||||||||||||
Sbjct 930 CAGACTAATACTCAATCCGGCTGTTGCAGCTAG 962
> AT3G09910.1 | Symbols: ATRAB18C, ATRABC2B, RABC2b | RAB GTPase
homolog C2B | chr3:3036714-3038429 REVERSE LENGTH=1076
Length=1076
Score = 580 bits (314), Expect = 4e-165
Identities = 497/584 (85%), Gaps = 18/584 (3%)
Strand=Plus/Plus
Query 1 ATGGGATCTTCTTCTGGGCAAAGTGGATACGATCTGTCTTTTAAGATCTTGTTGATTGGT 60
|||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 309 ATGGGATCTTCTTCTGGGCAAAGTGGGTATGATCTATCTTTCAAGATCTTGTTGATTGGA 368
Query 61 GATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTGAGCTTCATTTCCAGCTCCGTTGAAGAT 120
||||||||||||||||||||||| |||||| | ||||||||||||||||| || ||||||
Sbjct 369 GATTCTGGTGTTGGTAAAAGCAGCTTGCTTCTCAGCTTCATTTCCAGCTCTGTCGAAGAT 428
Query 121 CTTGCTCCTACCATTGGTGTTGA-TTTCAAGATCAAACA-ATTGACAGTAGGAGGCAAAA 178
|||||||| |||||||||||||| ||| ||||||||||| | ||| |||| |||| ||||
Sbjct 429 CTTGCTCCCACCATTGGTGTTGACTTT-AAGATCAAACAGA-TGAAAGTAAGAGGGAAAA 486
Query 179 GACTAAAACTCACAATCTGGGACACAGCTGGACAGGAACGGTTTAGAACACTGACGAGCT 238
| || ||||| ||||||||||||||||||||||| ||| ||| |||||| |||| || |
Sbjct 487 GGCTGAAACTTACAATCTGGGACACAGCTGGACAAGAAAAGTTCAGAACATTGACAAGTT 546
Query 239 CTTACTAT-AGAGGCGCCCAAGGAATCATTCTTGTTTATGATGTGACGAGAAGGGAGACA 297
|||| | | |||||| |||||||||||||||| ||||||||||| |||| ||| ||||||
Sbjct 547 CTTA-TTTCAGAGGCTCCCAAGGAATCATTCTCGTTTATGATGTCACGAAAAGAGAGACA 605
Query 298 TTTACAAACTTAGTAGATGTGTGGGGTAAGGAGATTGAGCTTTATTCCACAAACCAAGAA 357
||| ||||| | |||| | |||| ||| ||||||||||| ||||| || ||||| ||
Sbjct 606 TTTTTGAACTTGGCAGATATTTGGGCTAAAGAGATTGAGCTATATTCGACTAACCATGAC 665
Query 358 TG--TGTAAGGATGCTCGTTGGGAACAAAGTCGATAGAGAATCTGAGAGAGG-A-GTAAG 413
|| | ||| |||||||||||| |||||||| ||||||||||| ||| ||| | || ||
Sbjct 666 TGCAT-TAA-GATGCTCGTTGGCAACAAAGTTGATAGAGAATC--AGAAAGGAAGGTTAG 721
Query 414 CAGAGAAGAAGGGATTGCTTTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGC 473
| | |||||||| || ||| |||| ||||| ||||| || |||||| ||| ||||| ||
Sbjct 722 CCGGGAAGAAGGAATGGCTCTAGCGAAAGACCTCAATTGTTTGTTTCATGAATGTAGCGC 781
Query 474 TAGAACTCGACAAAACGTGGAACAG-TGTTTCGAAGAGTTGGCTTTGAAGATAATGGAGG 532
||||| ||| ||||||| |||| | || ||||||||| | |||||||||||||||||||
Sbjct 782 AAGAACCCGAGAAAACGT-GAACGGATGCTTCGAAGAGCTAGCTTTGAAGATAATGGAGG 840
Query 533 TACCTAGTCTCTTGGAAGAAGGATCAAG-TGCTGTGAAGAGAAA 575
|||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 841 TACCTAGTCTTTTGGAAGAAGGATCAAGCT-CTGTGAAGAGAAA 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5