BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892266

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03550.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   460    2e-129


> AT5G03550.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: TRAF-like family protein (TAIR:AT2G42460.1); Has 137 
Blast hits to 125 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr5:895813-896145 
REVERSE LENGTH=333
Length=333

 Score =  460 bits (249),  Expect = 2e-129
 Identities = 282/298 (95%), Gaps = 2/298 (1%)
 Strand=Plus/Plus

Query  1    ATGAACCTTCTCTGCAACACCATCGGGATACTTTACCACACGCCTCTTGGTTATCTCACC  60
            ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAACCTTCTCTGCGACATCATCGGGATACTTTACCACACGCCTCTTGGTTATCTCACC  60

Query  61   GAAGCAGAATTGAGCAAAGTTTCCAAGGAT-TCGTATGATCTGACACAAGCTGGTTTTAA  119
            ||||||||||||||||||| ||| |||||| | || ||||||||||||||| ||||||||
Sbjct  61   GAAGCAGAATTGAGCAAAGCTTCAAAGGATAT-GTGTGATCTGACACAAGCCGGTTTTAA  119

Query  120  GCTGGAGTGGTTGCAGTCAAAGCTTGACAAGGTTTCCTTGGAGAAGAAGACTTCTGAAGA  179
             ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  120  CCTGGATTGGTTGCAGTCAAAGCTTGACATGGTTTCCTTGGAGAAGAAGACTTCTGAAGA  179

Query  180  ACGGATTGTGGAACTCAAACTAGAGGTCAAGAAACTTGTGATGACTGTGACTGATCTCAA  239
            ||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct  180  ACGGATTCTGGAACTCAAACTAGAGGTCAAGAAACTCGTGATGACTGCGACTGATCTCAA  239

Query  240  TAGTGAGAGGAAAAGGGAGAAGAAGAAGTTGAAGAAGCAACCAAACTGGATACACGCA  297
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  240  TAGTGAGAGGAAAAAGGAGAAGAAGAAGTTGAAGAAGCAACCAAGCTGGATACACGCA  297



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14024701971


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5