BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892266 Length=303 Score E Sequences producing significant alignments: (Bits) Value AT5G03550.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 460 2e-129 > AT5G03550.1 | Symbols: | BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G42460.1); Has 137 Blast hits to 125 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:895813-896145 REVERSE LENGTH=333 Length=333 Score = 460 bits (249), Expect = 2e-129 Identities = 282/298 (95%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 1 ATGAACCTTCTCTGCAACACCATCGGGATACTTTACCACACGCCTCTTGGTTATCTCACC 60 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAACCTTCTCTGCGACATCATCGGGATACTTTACCACACGCCTCTTGGTTATCTCACC 60 Query 61 GAAGCAGAATTGAGCAAAGTTTCCAAGGAT-TCGTATGATCTGACACAAGCTGGTTTTAA 119 ||||||||||||||||||| ||| |||||| | || ||||||||||||||| |||||||| Sbjct 61 GAAGCAGAATTGAGCAAAGCTTCAAAGGATAT-GTGTGATCTGACACAAGCCGGTTTTAA 119 Query 120 GCTGGAGTGGTTGCAGTCAAAGCTTGACAAGGTTTCCTTGGAGAAGAAGACTTCTGAAGA 179 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 120 CCTGGATTGGTTGCAGTCAAAGCTTGACATGGTTTCCTTGGAGAAGAAGACTTCTGAAGA 179 Query 180 ACGGATTGTGGAACTCAAACTAGAGGTCAAGAAACTTGTGATGACTGTGACTGATCTCAA 239 ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 180 ACGGATTCTGGAACTCAAACTAGAGGTCAAGAAACTCGTGATGACTGCGACTGATCTCAA 239 Query 240 TAGTGAGAGGAAAAGGGAGAAGAAGAAGTTGAAGAAGCAACCAAACTGGATACACGCA 297 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 240 TAGTGAGAGGAAAAAGGAGAAGAAGAAGTTGAAGAAGCAACCAAGCTGGATACACGCA 297 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14024701971 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5