BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892272
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03590.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1125 0.0
AT5G03600.1 | Symbols: | SGNH hydrolase-type esterase superfam... 104 1e-21
> AT5G03590.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:908563-910149 FORWARD LENGTH=696
Length=696
Score = 1125 bits (609), Expect = 0.0
Identities = 668/697 (96%), Gaps = 2/697 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCCCAATGCAGTGTCTTGGAAACCCCCTTATGGTATCACTTTCCCCGGTAAACCT 60
|||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCCCACTGCATTGTCTTGGAAACTCCCTTATGGTATCACTTTCCCCGGTAAACCT 60
Query 61 TCCGGCCGTTATTCTGATGGCCTTATCGCCACCGACTTTCTAGGGTCCGAAGTATTCGAC 120
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||
Sbjct 61 TCCGGCCGTTATTCTGATGGCCTTACCGCCACCGATTTTCTAGGGTCCGAAGTGTTTGAC 120
Query 121 TCTCCGGTTGATCGATCGCCAAACATCTCTACTCAGGTCGGTTTCTTGGTTAACCTCGCC 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 121 TCTCCGGTTGATCGATCGCCAAACATCTCTACTCAGGTGGGTTTCTTGGTTAACCTTGCC 180
Query 181 CTCGCCCGCCGTGTCTACACTATCGACGGCGACCTTGCTTCCTCTTACGCTCTCCTTAGC 240
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 CTTGCCCGCCGTGTCTACACTATCGACGGCGACCTTGCTTCCTCCTACGCTCTCCTCAGC 240
Query 241 TACTCCGGCAGCGACTATTATGGTTTTATCGACCAAAACCCTAATATGGCTGCCTACCCA 300
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TACTCCGGCACCGACTATTATGGTTTCATCGACCAAAACCCTAATATGGCTGCCTACCCA 300
Query 301 GCATTTGTAGAGTTCATCGTGGAAGATATACATTGCAACGAGTCATATAGCGATTTGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCATTTGTAGAGTTCATCGTGGAAGATATACATTGCAACGAGTCATATAGCGATTTGGTG 360
Query 361 AGACTCCACAATGAG-GGATTGAAGAAAGTCGTGGCCAAGCTTAACAAAGAGGACAAGTT 419
||||||||||| ||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 AGACTCCACAACGAGTCG-TTGAAGAAAGCCGTGGCCAAGCTTAACAAAGAGGACAAGTT 419
Query 420 TAGGACCAAGGGGGACCGTTTCGTCATCGTTGATCTTCACAAAGCCTTCATGGCCGTCTT 479
|||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 420 TAGGACTAAGGGGGACCGTTTTGTCATCGTTGATCTTCACAAAGCCTTCATGACCATCTT 479
Query 480 GGAGAAAAAAGGGAGCAAAAGGTTTAAAACCCCGTTGAAGCCGTGCTGCGAAGGCGATTG 539
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 AGAGAAAAAAGGGAACAAAAGGTTTAAAAGCCCGTTGAAGCCGTGCTGCGAAGGCGATTG 539
Query 540 TGCACGTATGGATATGAAGGGTGCAAAGAAGTATACATTATGTAATGATCCAAAGTCTGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCACGTATGGATATGAAGGGTGCAAAGAAGTATACATTATGTAATGATCCAAAGTCTGC 599
Query 600 TTTCTTCTGGGATGAAATTAATCCAACTCAAGAAGTATGGAGATCGATTTACTCGCTATT 659
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 TTTCTTCTGGGATGAAATTAATCCAACTCAAGAAGGATGGAGATCGATTTACTCGCTATT 659
Query 660 AGGCAAATCTCTAACCGAGTCTTTGACTAACGGGTAA 696
||||||||||||||||||||||||||| || ||||||
Sbjct 660 AGGCAAATCTCTAACCGAGTCTTTGACCAAAGGGTAA 696
> AT5G03600.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr5:912807-914226 FORWARD LENGTH=969
Length=969
Score = 104 bits (56), Expect = 1e-21
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 30 CCCTTATGGTATCACTTTCCCCGGTAAACCTTCCGGCCGTTATTCTGATGGCCTTATCGC 89
|||||| ||||||||||||||||||||||||||||||||||||| |||||| || || ||
Sbjct 111 CCCTTACGGTATCACTTTCCCCGGTAAACCTTCCGGCCGTTATTGTGATGGTCTCATAGC 170
Query 90 CACCGACTTTCTAG 103
|||||| |||||||
Sbjct 171 CACCGATTTTCTAG 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5