BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892273

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04070.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfam...   219    2e-56


> AT5G04070.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily 
protein | chr5:1102090-1104446 FORWARD LENGTH=1482
Length=1482

 Score =  219 bits (118),  Expect = 2e-56
 Identities = 170/192 (89%), Gaps = 15/192 (8%)
 Strand=Plus/Plus

Query  124   GATGCAGCTGAATCTGTCATTGATGCTGCTTTAGCTCCACCTCTAAGATGTGAAATATCA  183
             ||||||||||||||||||||||||||||||||||||||| | |       ||||||||||
Sbjct  1052  GATGCAGCTGAATCTGTCATTGATGCTGCTTTAGCTCCA-C-C-------TGAAATATCA  1102

Query  184   TGCAAATATTTCATTGGCAGAAAGGGGCAGACCATTGAATCTTCAGCACTTTCCAGTGAC  243
              ||||||||||| ||||| |   || |  |||||||||||||||| ||||||||||||||
Sbjct  1103  GGCAAATATTTCTTTGGC-G---GGAG--GACCATTGAATCTTCAACACTTTCCAGTGAC  1156

Query  244   CAGAAAATGGCTAAGGAACTTTGGGACACATCATGTCTCATATTTGACGAATTGCAGCAA  303
             | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1157  CCGAAAATGGCTAAGGAACTTTGGGACACATCATGTCTCATATTTAACGAATTGCAGCAA  1216

Query  304   GCTCACACTTGA  315
              |||||||||||
Sbjct  1217  ACTCACACTTGA  1228



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5