BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892274
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03600.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1474 0.0
AT5G03590.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 248 7e-65
> AT5G03600.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr5:912807-914226 FORWARD LENGTH=969
Length=969
Score = 1474 bits (798), Expect = 0.0
Identities = 912/969 (94%), Gaps = 0/969 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTCAAACCAGCTTCTTGGACCAAGAAAAGTACCGAAACTCTTTGTATTCGGAGAT 60
||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||
Sbjct 1 ATGGGTTCAAACCAGCTTCTTCGACCAAGAAAAGTACCGAAGCTCTTTGTGTTCGGAGAT 60
Query 61 TCTTACGCGGATACCGGAAACACGAAGCGCGACACCGAGGCTTGGGCCCTCCCTTACGGT 120
|||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 61 TCTTACGCGGATACGGGAAACACAAAGCGCGACACAGAGGCTTGGGCTATCCCTTACGGT 120
Query 121 ATCACTTTCCCCGGTAAACCTTCCGGCCGTTACTGTGATGGTCTCATAGCCACCGATTTT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 ATCACTTTCCCCGGTAAACCTTCCGGCCGTTATTGTGATGGTCTCATAGCCACCGATTTT 180
Query 181 CTAGAAAAAGTGTTGGGGGCAGAATCACCGTACCTCTATAGAACTCACGGACGAAAGaaa 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 181 CTAGAAAAAGTATTGGGGGCAGAATCACCGTACCTCTATAGAACTCACGGACGAGATAAA 240
Query 241 aaaataaaaaGAGGCATGAATTTTGCGTTCGGGGCGTCCAAAATGTTGGAGTCCTCTCCG 300
|||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 241 GGGCTAAAAAGAGGAATGAATTTTGCGTTTGGGGGGTCCAAAATGTTGGACTCCTCTCCG 300
Query 301 AATAGTCCATTCCCCAATATAACTGCTCAGGTGAATTTCTTAGTAGACTTTGTCCTCGCT 360
||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||
Sbjct 301 AATAGTCCATTCCCCAATATAACTGCTCAAGTGAATTTTTTGGTAGACCTTGTCCTCGCC 360
Query 361 GGCCGTGTCTACGGAGACATTACTCCCTCCGACGTTTCTCTCATCAGCTACGCCGGAGGC 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 361 GGCCGTGTCTACGGAGACATTACTCCCTCCGATGTTTCTCTCATCAGCTACGCTGGAGGC 420
Query 421 GACTATATCTATTACATCGACCAAAATCGCCCTGCCGCTGGCTTGAAAGCAATAGTAGAG 480
|||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 421 GACTATATTTATTACATCGACCAAAATCGTCCTGCCGCTGGCTTAAAAGCACTAGTAGAG 480
Query 481 AAAGTCGTGGATAATTTACACGTTAATATGATAATATTGAGTGGCCTGCTATTTAAGAAG 540
||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 481 AAAGTCGTGGATAATTTACGCGTTAATATGATAGTATTGGGTGGCCTGCTATTTAAGAAG 540
Query 541 ATAGCAGTAACATCGCTGCAGCCGATCGGATGCCTCCCTTCTTACACCTCTGCATCGTCG 600
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 ATAGCAGTAACATCGCTGCAGCCGATCGGATGCCTTCCTTCTTACACCTCTGCATCCTCG 600
Query 601 TTCAAGAGTTGCAACGAGTCACAAAGTGCATTGGTGGAACTACACAACAAATTGCTGAAA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 TTCAAGAGTTGCAACGAGTCACAAAGTGCATTGGTGGAACTACACAACAAATTGTTGAAA 660
Query 661 CAAGTCGTGGCCAAGCTCAACGAACAGTCCAGGGTTATGAAAAAGGGGCAGCATTTCTTT 720
|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 661 AAAGTGGTGGCCAAGCTCAACGAACAGTCCAGGGTTATGAAGAAGGAGCAGCATTTCTTT 720
Query 721 ATCATTGATATTCACAACGCCTTTATGACCGTTCTTAAGAACAAAGGGAACAAAAGATTT 780
||||||||||| ||||||||||| ||||||||| | ||||||||||||| ||||||||||
Sbjct 721 ATCATTGATATACACAACGCCTTCATGACCGTTATGAAGAACAAAGGGAGCAAAAGATTT 780
Query 781 AAAAATCCGATGAAGTCGTGTTGCGAAGGTTATTGTGGGCGTTCGAGTGACGGTGAGAAG 840
||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||
Sbjct 781 AAAAACCCGATGAAGTCGTGTTGTGAAGGCTATTGTGGGCGTTCAAGTGACGGTGGGAAG 840
Query 841 TTGTATACGTTATGTGATGATCCTAAGTCTTCTTTCTTTTGGGATGAAGTTCACCCTACT 900
||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 841 TTGTATACGTTATGTGATGATCCAAAGTCTTTTTTCTTTTGGGATGCAGTTCACCCTACT 900
Query 901 CAAGAAGGATGGAGATCGATTTACTCGGTATTAGGGAAACCTTTAACCGAGTTTTTGACT 960
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 901 CAAGAAGGATGGAGATCGATTTACTCGGTATTAGGGAACCCTTTAACCGACTTTTTGACC 960
Query 961 AAACCGTAA 969
|||||||||
Sbjct 961 AAACCGTAA 969
> AT5G03590.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:908563-910149 FORWARD LENGTH=696
Length=696
Score = 248 bits (134), Expect = 7e-65
Identities = 290/364 (80%), Gaps = 15/364 (4%)
Strand=Plus/Plus
Query 609 TTGCAACGAGTCACAAAGTGCA-TTGGTGGA-ACTACACAACAAATTGCTGAA-ACAAGT 665
||||||||||||| | || | | ||||| || ||| |||||| | | | |||| | |||
Sbjct 333 TTGCAACGAGTCATATAGCG-ATTTGGT-GAGACTCCACAACGAGTCGTTGAAGA-AAGC 389
Query 666 CGTGGCCAAGCTCAACGAACAGTCCAGGGTTATGAAAAAGGGGCAGCATTTCT-TTATCA 724
|||||||||||| ||| || || || | ||| || |||||| | | ||| | | |||
Sbjct 390 CGTGGCCAAGCTTAACAAAGAGGACAAGTTTAGGACTAAGGGGGACCGTTT-TGTCATCG 448
Query 725 TTGATATTCACAACGCCTTTATGACCGTTCTTA-AGAACAAAGGGAACAAAAGATTTAAA 783
||||| ||||||| ||||| |||||| ||||| |||| |||||||||||||| ||||||
Sbjct 449 TTGATCTTCACAAAGCCTTCATGACC-ATCTTAGAGAAAAAAGGGAACAAAAGGTTTAAA 507
Query 784 AATCCGATGAAGTCGTGTTGCGAAGGTTATTGTGGGCGT-TCGA-GTG-ACGGTG-AGAA 839
| ||| ||||| |||| |||||||| |||||| ||| | || || | |||| | ||
Sbjct 508 AGCCCGTTGAAGCCGTGCTGCGAAGGCGATTGTGCACGTATGGATATGAAGGGTGCA-AA 566
Query 840 GTTGTATACGTTATGTGATGATCCTAAGTCTTCTTTCTTTTGGGATGAAGTTCACCCTAC 899
| |||||| |||||| ||||||| |||||| ||||||| ||||||||| || | || ||
Sbjct 567 GAAGTATACATTATGTAATGATCCAAAGTCTGCTTTCTTCTGGGATGAAATTAATCCAAC 626
Query 900 TCAAGAAGGATGGAGATCGATTTACTCGGTATTAGGGAAACCTTTAACCGAGTTTTTGAC 959
|||||||||||||||||||||||||||| ||||||| ||| || ||||||||| ||||||
Sbjct 627 TCAAGAAGGATGGAGATCGATTTACTCGCTATTAGGCAAATCTCTAACCGAGTCTTTGAC 686
Query 960 TAAA 963
|||
Sbjct 687 CAAA 690
Score = 102 bits (55), Expect = 6e-21
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 109 CTCCCTTACGGTATCACTTTCCCCGGTAAACCTTCCGGCCGTTACTGTGATGGTCTCATA 168
|||||||| ||||||||||||||||||||||||||||||||||| | |||||| || |
Sbjct 28 CTCCCTTATGGTATCACTTTCCCCGGTAAACCTTCCGGCCGTTATTCTGATGGCCTTACC 87
Query 169 GCCACCGATTTTCTAG 184
||||||||||||||||
Sbjct 88 GCCACCGATTTTCTAG 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5