BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892283
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03690.1 | Symbols: | Aldolase superfamily protein | chr5:9... 1670 0.0
AT2G36460.1 | Symbols: | Aldolase superfamily protein | chr2:1... 813 0.0
> AT5G03690.1 | Symbols: | Aldolase superfamily protein | chr5:963148-965050
REVERSE LENGTH=1491
Length=1491
Score = 1670 bits (904), Expect = 0.0
Identities = 1001/1049 (95%), Gaps = 2/1049 (0%)
Strand=Plus/Plus
Query 29 ATGAGCTCATCGCCAATGCCGCTTACATCGGTACACCAGGGAAAGGTATTCTCGCTGCTG 88
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 199 ATGAGCTCATCGCCAATGCCGCTTACATAGGAACACCAGGGAAAGGTATTCTCGCTGCTG 258
Query 89 ATGAATCCACCGGAACAATCGGAAAACGTTTCGCAAGCATTAACGTTGAGAACGTTGAAT 148
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 259 ATGAATCCACAGGAACAATCGGAAAACGTTTCGTAAGCATTAACGTTGAGAACGTTGAAT 318
Query 149 CAAACAGACGTGCTCTTCGTGAGCTCTTGTTCACCACTCCTGGAGCTCTCCAATACATCA 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CAAACAGACGTGCTCTTCGTGAGCTCTTGTTCACCACTCCTGGAGCTCTCCAATACATCA 378
Query 209 GTGGTATCATCCTCTTCGAAGAAACACTCTACCAGAAAACTGCTTCAGGGAAACCATTTG 268
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 379 GTGGTATCATTCTCTTCGAAGAAACACTCTACCAGAAAACTGCTTCAGGGAAACTATTTG 438
Query 269 TTGATGTAATGAAGGAAGCTGGAGTGCTTCCAGGTATCAAAGTCGATAAAGGAACCGTTG 328
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 439 TTGATGTAATGAAGGAAGCTGGAGTGCTTCCAGGTATTAAAGTCGATAAAGGAACCGTTG 498
Query 329 AGCTCGCTGGTACAAACGGCGNAAAC-ACAACCATTGGCCTTGATGGACTTGGTGACCGT 387
|||||||||||||||| || | |||| ||||||| ||| || || |||||||||||||||
Sbjct 499 AGCTCGCTGGTACAAATGGTG-AAACCACAACCACTGGTCTCGACGGACTTGGTGACCGT 557
Query 388 TGCAAGAAATACTACGAAGCTGGTGCACGTTTTGCTAAGTGGCGTGCTGTTCTCAAAATT 447
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 558 TGCAAGAAGTACTATGAAGCTGGTGCACGTTTTGCCAAGTGGCGTGCTGTTCTCAAAATC 617
Query 448 GGAGACAATGAGCCTTCTGAGTTGGCTATCCATGAGAATGCTTACGGTTTAGCAAGATAT 507
||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 618 GGAAACAATGAGCCTTCTGAGTTAGCTATCCATGAGAATGCTTATGGTTTAGCGAGATAC 677
Query 508 GCAGTTATTTGCCAAGAGAATGGTCTTGTCCCCATTGTTGAACCAGAGATTCTTGTTGAT 567
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 678 GCAGTTATTTGCCAAGAGAACGGTCTTGTTCCCATTGTTGAACCAGAGATTCTTGTTGAT 737
Query 568 GGATCTCACGACATTGAGCAATGTGCTTATGTTACGGAACGAGTTCTTGCGGCTTGTTAC 627
|||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 738 GGATCTCATGACATTGAGAAATGTGCTTATGTCACGGAACGAGTCCTTGCGGCTTGTTAC 797
Query 628 AAGGCTCTGAGTGATCACCATGTGATCTTAGAAGGAACACTCTTGAAACCAAACATGGTT 687
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AAGGCTCTTAGTGATCACCATGTGATCTTAGAAGGAACACTCTTGAAACCAAACATGGTT 857
Query 688 ACTCCAGGTTCAGACAGTGGTTCTAAAGTTAAACCAGAAGTGATCGCCGAGCACACGGTC 747
||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 858 ACTCCAGGTTCTGACAGTGGTTCTAAAGTTAAACCCGAAGTGATCGCCAAGCACACGGTC 917
Query 748 CGTGCTTTACAGAGGACGGTTCCTGCAGCTGTTCCGGCCGTTGTGTTCTTGTCTGGAGGA 807
||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 918 CGTGCTTTACAAAGGACTGTTCCTGCAGCAGTTCCAGCCGTTGTGTTCTTGTCTGGAGGA 977
Query 808 CAGAGTGAAGAAGAAGCAACTGTGAATCTAAACGCCATTAATCAGCTCAAAGGGAAGAAA 867
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 978 CAGAGTGAGGAAGAAGCAACTGTGAATTTAAACGCCATTAATCAGCTCAAAGGGAAGAAA 1037
Query 868 CCATGGAGCTTGACGTTTTCGTATGGACGCGCGCTTCAACAGAGTACACTCAAGGCTTGG 927
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1038 CCATGGAGCTTGACGTTTTCGTATGGACGTGCGCTTCAACAGAGTACACTCAAGGCTTGG 1097
Query 928 GGAGGTAAAGAGGAGAATTTTGAGAAGGCTCAAAAGGCGTTCTTGGCTCGAGCCAAGGCT 987
|||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||
Sbjct 1098 GGAGGTAAAGAGGAGAATGTGGACAAGGCTCAAAAGGCGTTCTTGGCTAGAGCCAAGGCT 1157
Query 988 AACTCTGAAGCAACCCTTGGTGGCTACAAGGGTGATGCTCAGCTCGGTGAAGGTGCTTCC 1047
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 1158 AACTCTGAAGCAACCCTTGGTGGCTACAAGGGTGATGCTCAGTTAGGTGAAGGTGCGTCC 1217
Query 1048 GAGAGCCTTCACGTCAAAGACTACAAATA 1076
|||||||||||||||||||||||||||||
Sbjct 1218 GAGAGCCTTCACGTCAAAGACTACAAATA 1246
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 ATGTCGTGCTTCAAATCCAAATTCGCCG 28
||||||||||||||||||||||||||||
Sbjct 69 ATGTCGTGCTTCAAATCCAAATTCGCCG 96
> AT2G36460.1 | Symbols: | Aldolase superfamily protein | chr2:15296701-15298514
REVERSE LENGTH=1432
Length=1432
Score = 813 bits (440), Expect = 0.0
Identities = 887/1099 (81%), Gaps = 45/1099 (4%)
Strand=Plus/Plus
Query 1 ATGTCGTGCTTCAAATCCAAATTCGCCGATGAGCTCATCGCCAATGCCGCTTACATCGGT 60
||||| | ||||| |||||||||||||||||||| || || || || |||||||||||
Sbjct 128 ATGTCTTCCTTCACCTCCAAATTCGCCGATGAGCTGATTGCTAACGCTGCTTACATCGGA 187
Query 61 ACACCAGGGAAAGGTATTCTCGCTGCTGATGAATCCACCGGAACAATCGGAAAACGTTTC 120
||||| || |||||||| || || || |||||||| || || || || || |||||| ||
Sbjct 188 ACACCTGGAAAAGGTATCCTTGCGGCAGATGAATCAACTGGTACTATTGGGAAACGTCTC 247
Query 121 GCAAGCATTAACGTTGAGAACGTTGAATCAAACAGACGTGCTCTTCGTGAGC-TCTTGTT 179
|| ||||| |||||||||||||||||||| |||||||||||||||||||||| || | ||
Sbjct 248 GCTAGCATCAACGTTGAGAACGTTGAATCCAACAGACGTGCTCTTCGTGAGCTTC-TCTT 306
Query 180 CACCACTCCTGGAGCTC-TCCAATACATCAGTGGTATCATCCTCTTCGAAGAAACACTCT 238
||| ||||||||||||| ||| | | |||||||| | |||||||| |||||||| || |
Sbjct 307 CACTACTCCTGGAGCTCTTCC-TTGCCTCAGTGGTGTTATCCTCTTTGAAGAAACTCTTT 365
Query 239 ACCAGAA-AACTGCTTCA-GGGAAACCATTTGTTGATGTAATGAAGGA-AGCTGGAGTGC 295
||||||| | || | | | || | || ||||||||| | |||| || || |||||
Sbjct 366 ACCAGAAGAGCT-C-TGATGGTACGCCTTTTGTTGATATGTTGAA-GAGTGCAGGAGT-T 421
Query 296 TT-CCAGGTATCAAAGTCGATAAAGGAACCGTTGAGCTCGCTGGTACAAACGGCGNAAAC 354
|| || ||||| || || ||||| || ||||||||||| ||||| || || || | | ||
Sbjct 422 TTGCCTGGTATTAAGGTTGATAAGGGTACCGTTGAGCTTGCTGGAACCAATGGTG-AGAC 480
Query 355 -ACAAC-CATTGGCCTTGATGGACTTGGTGACCGTTGCAAGAAATACTACGAAGCTGGTG 412
|| || || || |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 481 TACTACTCA-AGGTCTTGATGGTCTTGGTGACCGTTGCAAGAAATACTACGAGGCTGGTG 539
Query 413 CACGTTTTGCTAAGTGGCGTGCTGTTCTCAAAATTGGAGACAATGAGCCTTCTGAGTTGG 472
| ||||| || ||||||||||| ||||| || ||||| | |||||||| ||| |||| |
Sbjct 540 CTCGTTTCGCCAAGTGGCGTGCGGTTCTTAAGATTGGTGTTAATGAGCCATCTCAGTTAG 599
Query 473 CTATCCATGAGAATGCTTACGGTTTAGCAAGATATGCAGTTATTTGCCAAGAGAATGGTC 532
||||||||||||| ||||| || || || || ||||| || ||||| || ||||| ||||
Sbjct 600 CTATCCATGAGAACGCTTATGGATTGGCTAGGTATGCTGTCATTTGTCAGGAGAACGGTC 659
Query 533 TTGTCCCCATTGTTGAACCAGAGATTCTTGTTGATGGATCTCACGACATTGAGCAA-TGT 591
|||| || ||||| || || ||||||||||||||||| ||||| |||||| || || |||
Sbjct 660 TTGTGCCGATTGTGGAGCCTGAGATTCTTGTTGATGGCTCTCATGACATTCAG-AAGTGT 718
Query 592 GCTTATGTTACGGAACGAGTTCTTGCGGCTTGTTACAAGGCTCTGAGTGATCACCATGTG 651
|| || || || || |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 719 GCCGCGGTGACAGAGCGTGTTCTTGCAGCTTGCTACAAGGCTCTGAGTGATCACCATGTC 778
Query 652 AT-CTTAGAAGGAACACTCTTGAAACCAAACATGGTTACTCCAGGTTCAGACAGTGGTTC 710
| || ||||||||||||||||||||| ||||||||||||||||| ||||| |||| |
Sbjct 779 TTGCT-AGAAGGAACACTCTTGAAACCTAACATGGTTACTCCAGGATCAGAGAGTG---C 834
Query 711 TAAAGTTAAACCAGAAGTGATCGCCGAGCACACGGTCCGTGCT-TTACAGAGGACGGTTC 769
|| ||| |||||| ||||| || |||||||| ||||||||| || |||||||| ||||
Sbjct 835 GAAGGTTGCACCAGAGGTGATTGCTGAGCACACTGTCCGTGCTCTT-CAGAGGACAGTTC 893
Query 770 CTGCAGCTGTTCCGGCCGTTGTGTTCTTGTCTGGAGGACAGAGTGAAGAAGAAGCAACTG 829
| || |||||||| ||| | |||||||||||||| |||||||| || ||||| || ||
Sbjct 894 CAGCTGCTGTTCCAGCCATAGTGTTCTTGTCTGGTGGACAGAGCGAGGAAGAGGCGACAA 953
Query 830 TGAATC-TAAACGCCATTAATCAGCTCAAAGGGAA-GAAACCATGGA-GCTTGACGTTT- 885
||| | | ||||| || || ||| | || | || ||| || ||| | ||| | |||
Sbjct 954 -GAAACCTTAACGCGATGAACCAGTTGAA-GACAAAGAAGCCTTGGTCG-TTGTC-TTTC 1009
Query 886 TCGTATGGACGCGCGCTT-CAACAGAGTACACTCAAGGCTTGGGGAGGTAAAGAGGAGAA 944
|| | |||| | ||| || || ||||| || | ||| |||||||||| |||||||||||
Sbjct 1010 TCCTTTGGAAGGGCG-TTGCAGCAGAGCACTTTGAAGACTTGGGGAGGAAAAGAGGAGAA 1068
Query 945 TTTTGA-GAAGGCTCAA-AAGGCGTTCTTGGCTC-GA-GCCAAGGCTAACTCTGAAGCAA 1000
| | || |||||||||| ||| ||||||||| || || || ||| |||||||||||||||
Sbjct 1069 TGT-GAAGAAGGCTCAAGAAG-CGTTCTTGG-TCAGATGCAAAG-CTAACTCTGAAGCAA 1124
Query 1001 CCCTTGGTGGCT-ACAAGGGTGATGCTCAGCTCGGTGAAGGTGCTTCCGAGAGCCTTCAC 1059
| ||||||| || |||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1125 CACTTGGTG-CTTACAAGGGTGATGCTAAGCTCGGTGAAGGTGCAGCTGAGAGCCTTCAC 1183
Query 1060 GTCAAAGACTACAAATACT 1078
|| || || ||||| ||||
Sbjct 1184 GTTAAGGATTACAAGTACT 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5