BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892294 Length=648 Score E Sequences producing significant alignments: (Bits) Value AT5G03790.1 | Symbols: ATHB51, LMI1, HB51 | homeobox 51 | chr5:... 521 2e-147 > AT5G03790.1 | Symbols: ATHB51, LMI1, HB51 | homeobox 51 | chr5:1004983-1006373 FORWARD LENGTH=710 Length=710 Score = 521 bits (282), Expect = 2e-147 Identities = 449/528 (85%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 1 ATGGAATGGTCAACAACGAGCAACGTACAAAACGAGAGAGTTGCTTTCATGCCACCACCG 60 ||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||| || Sbjct 3 ATGGAGTGGTCAACAACGAGCAACGTAGAAAACGTGAGAGTAGCTTTCATGCCACCGCCA 62 Query 61 TGGCTGGAGTCTAACTCCTTTAACTCGCTCCGCAGCTTCAACTATGATTCTTACACAGCA 120 |||| |||||||| |||||||||||||||| ||||||||||| |||| ||| || ||| Sbjct 63 TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTT--AC-GCA 119 Query 121 GGAAATTCGTATAAGTCT-GCCACTACGCAAACTGGACCGGTTATCCCTGTACCGGAATC 179 |||||||| |||| | || || | ||| ||||| |||||||||||| ||||||||||||| Sbjct 120 GGAAATTCATATACGCCTGGCGA-TACACAAACCGGACCGGTTATCTCTGTACCGGAATC 178 Query 180 AGAAAAGATCATCAATGCGTACCAATGTCCGAGTAACAACAATGAAATGATAAAGAAGAA 239 |||||||||||| |||||||||| || ||||| ||||||||||| ||||| || || || Sbjct 179 AGAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAATGAGATGAT-AA-AA-AA 235 Query 240 TAAGAGGCTAACGAGTGAACAATTAGCTTCGCTTGAACTACGTTTTCAAGAGGATTTCAA 299 ||||| |||||||||| |||||||||||| ||||| | | |||||||||| || |||| Sbjct 236 GAAGAGACTAACGAGTGGACAATTAGCTTCACTTGAGCGAAGTTTTCAAGAAGAGATCAA 295 Query 300 ATTAGATTCCGAGAGGAAGCTGAAGCTAG-CGAAG-GAGCTAGGTCTGGAGCCACGGCAG 357 ||||||||| || |||||| ||||||| | || || ||||| |||||| ||||||| ||| Sbjct 296 ATTAGATTCAGACAGGAAGGTGAAGCT-GTCG-AGAGAGCTCGGTCTGCAGCCACGTCAG 353 Query 358 GTCGCGGTTTGGTTCCAGAACCGCCGTGCACGGTGGAAGGTGAAGCATCTCGAAG-AGTC 416 | || ||||||||||| |||||||||||||||||||||| |||||| || | || ||| Sbjct 354 ATAGCAGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTTG-AGCAGTT 412 Query 417 ATACGACTCACTTAGGCAAGAGTACGATGCCATTTGGAGAGAGAAGCAGATGCTACACGA 476 |||||||| ||||| ||||||||||| | | ||| || ||||| || ||| ||||||| Sbjct 413 GTACGACTCGCTTAGACAAGAGTACGACGTCGTTTCTAGGGAGAAACAAATGTTACACGA 472 Query 477 TGAGGTGAAGAAGCTGAGAGCTATCATACTAAGAGATCAGGGTTTGAT 524 |||||||||||||||||||||| | |||||||||| ||||||||||| Sbjct 473 TGAGGTGAAGAAGCTGAGAGCT-T--TACTAAGAGACCAGGGTTTGAT 517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31295873581 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5