BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892294

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03790.1 | Symbols: ATHB51, LMI1, HB51 | homeobox 51 | chr5:...   521    2e-147


> AT5G03790.1 | Symbols: ATHB51, LMI1, HB51 | homeobox 51 | chr5:1004983-1006373 
FORWARD LENGTH=710
Length=710

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 449/528 (85%), Gaps = 17/528 (3%)
 Strand=Plus/Plus

Query  1    ATGGAATGGTCAACAACGAGCAACGTACAAAACGAGAGAGTTGCTTTCATGCCACCACCG  60
            ||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||| || 
Sbjct  3    ATGGAGTGGTCAACAACGAGCAACGTAGAAAACGTGAGAGTAGCTTTCATGCCACCGCCA  62

Query  61   TGGCTGGAGTCTAACTCCTTTAACTCGCTCCGCAGCTTCAACTATGATTCTTACACAGCA  120
            |||| ||||||||  |||||||||||||||| ||||||||||| |||| |||  || |||
Sbjct  63   TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTT--AC-GCA  119

Query  121  GGAAATTCGTATAAGTCT-GCCACTACGCAAACTGGACCGGTTATCCCTGTACCGGAATC  179
            |||||||| |||| | || || | ||| ||||| |||||||||||| |||||||||||||
Sbjct  120  GGAAATTCATATACGCCTGGCGA-TACACAAACCGGACCGGTTATCTCTGTACCGGAATC  178

Query  180  AGAAAAGATCATCAATGCGTACCAATGTCCGAGTAACAACAATGAAATGATAAAGAAGAA  239
            |||||||||||| |||||||||| || |||||  ||||||||||| ||||| || || ||
Sbjct  179  AGAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAATGAGATGAT-AA-AA-AA  235

Query  240  TAAGAGGCTAACGAGTGAACAATTAGCTTCGCTTGAACTACGTTTTCAAGAGGATTTCAA  299
             ||||| |||||||||| |||||||||||| ||||| | | |||||||||| ||  ||||
Sbjct  236  GAAGAGACTAACGAGTGGACAATTAGCTTCACTTGAGCGAAGTTTTCAAGAAGAGATCAA  295

Query  300  ATTAGATTCCGAGAGGAAGCTGAAGCTAG-CGAAG-GAGCTAGGTCTGGAGCCACGGCAG  357
            ||||||||| || |||||| ||||||| | || || ||||| |||||| ||||||| |||
Sbjct  296  ATTAGATTCAGACAGGAAGGTGAAGCT-GTCG-AGAGAGCTCGGTCTGCAGCCACGTCAG  353

Query  358  GTCGCGGTTTGGTTCCAGAACCGCCGTGCACGGTGGAAGGTGAAGCATCTCGAAG-AGTC  416
             | || ||||||||||| |||||||||||||||||||||| |||||| || | || ||| 
Sbjct  354  ATAGCAGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTTG-AGCAGTT  412

Query  417  ATACGACTCACTTAGGCAAGAGTACGATGCCATTTGGAGAGAGAAGCAGATGCTACACGA  476
             |||||||| ||||| ||||||||||| | | |||  || ||||| || ||| |||||||
Sbjct  413  GTACGACTCGCTTAGACAAGAGTACGACGTCGTTTCTAGGGAGAAACAAATGTTACACGA  472

Query  477  TGAGGTGAAGAAGCTGAGAGCTATCATACTAAGAGATCAGGGTTTGAT  524
            |||||||||||||||||||||| |  |||||||||| |||||||||||
Sbjct  473  TGAGGTGAAGAAGCTGAGAGCT-T--TACTAAGAGACCAGGGTTTGAT  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31295873581


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5