BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892301
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03860.1 | Symbols: MLS | malate synthase | chr5:1032103-103... 2649 0.0
> AT5G03860.1 | Symbols: MLS | malate synthase | chr5:1032103-1034570
REVERSE LENGTH=1905
Length=1905
Score = 2649 bits (1434), Expect = 0.0
Identities = 1606/1691 (95%), Gaps = 4/1691 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCTCGAGACCTCAGTTTATCGACCAAACGTCGCCGTCTATGATTCTCCGGATGGT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 44 ATGGAGCTCGAGACCTCAGTTTATCGACCAAACGTCGCCGTTTATGATTCTCCGGATGGT 103
Query 61 GTCGAGGTTCGAGGACGGTACGACCAAATCTTCGCTAAGATTTTGACAAGAGAAGCTCTT 120
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 104 GTGGAGGTTCGAGGACGGTACGACCAAATCTTCGCCAAGATTTTGACGAGAGAAGCTCTT 163
Query 121 AACTTTGTGGCTGAGTTACAGAGAGAGTTTCGTGGCCATGTGAGGTATGCCATGGAGTGC 180
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 164 AGCTTTGTGGCTGAGTTACAGAGAGAGTTTCGTGGCCATGTGAAGTATGCCATGGAGTGC 223
Query 181 CGGAAAGAGGCACGACGGCGTTACAACTCCGGTGCTGTTCCTGGGTTTGATCCTTCCACT 240
|||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 224 CGGAGAGAGGCAAGACGGCGTTATAACTCCGGTGCCGTTCCTGGGTTTGATCCTTCCACT 283
Query 241 AAGTTCATCAGAGACGGTGATTGGATCTGTGCCTCCGTCCCTCCCGCCGTTGCTGACCGG 300
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 284 AAGTTCATCAGAGACGGTGATTGGAGCTGTGCCTCCGTCCCTCCTGCCGTTGCTGACCGG 343
Query 301 AGAGTTGAGATAACCGGTCCGGTCGAGAGGAAGATGATCATCAACGCTCTTAACTCCGGA 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AGAGTTGAGATCACCGGTCCGGTCGAGAGGAAGATGATCATCAACGCTCTTAACTCCGGA 403
Query 361 GCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATG 420
||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 404 GCTAAAGTCTTTATGGCTGATTTCGAGGACGCTTTGTCTCCAAGCTGGGAGAATCTGATG 463
Query 421 AGAGGGCATGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCATGACAAGTCA 480
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 464 AGAGGGCATGTGAACCTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCA 523
Query 481 AGGAACAGAGTTTATAAGCTCAACGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGT 540
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 524 AGGAACAGAGTTTACAAGCTCAACGACCAAACCGCTAAGCTTTTTGTCCGGCCAAGAGGT 583
Query 541 TGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTC 643
Query 601 GATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGG- 702
Query 661 TTT-GGTCCATTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATTTGGAA 719
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 703 TTTCGGTCCATTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAA 762
Query 720 CAGCGTGTTTGAGCGAGCTGAGAAGATGTCTGGGATAGAGAGAGGAAGCATTAGAGCAAC 779
||| || |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 763 CAGTGTTTTTGAGCGTGCTGAGAAGATGGCTGGGATAGAGAGAGGAAGCATTAGAGCAAC 822
Query 780 AGTGCTGATCGAGACCCTCCCGGCTGTCTTCCAGATGAATGAGATACTATATGAACTGCG 839
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 823 TGTGCTTATCGAGACCCTCCCGGCTGTCTTCCAGATGAATGAGATACTCTATGAACTACG 882
Query 840 TGATCACACTGTCGGTTTAAACTGTGGAAGATGGGATTATATCTTCAGTTATGTCAAGAC 899
||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 883 TGATCACTCAGTCGGTTTAAACTGTGGAAGATGGGATTATATCTTCAGCTATGTCAAAAC 942
Query 900 CTTCCAATCTCACCCTGACCGGCTCTTACCAGACCGTGTCCTAGTCGGCATGGGCCAGCA 959
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 943 CTTCCAAGCTCACCCTGACCGGCTCTTACCAGACCGTGTCCTAGTTGGCATGGGCCAGCA 1002
Query 960 TTTCATGAGAAGTTACTCTGACCTTCTCATCCGTACTTGTCATAAGCGCGGTGTCCACGC 1019
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TTTCATGAGAAGTTACTCTGATCTTCTCATCCGTACTTGTCATAAGCGCGGTGTCCACGC 1062
Query 1020 TATGGGTGGCATGGCGGCTCAGATTCCAATAAGAGATGACCCGAAAGCGAATGAGATGGC 1079
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1063 CATGGGTGGCATGGCGGCTCAGATTCCGATAAGAGATGACCCAAAAGCGAATGAGATGGC 1122
Query 1080 ATTGGATCTAGTGAGGAAAGACAAGCTAAGAGAAGTAAGAGCTGGGCATGATGGGACATG 1139
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 1123 ATTGGATCTAGTGAGGAAAGACAAGCTGAGAGAGGTAAGAGCAGGGCATGATGGAACATG 1182
Query 1140 GGCGGCTCATCCAGGACTCATCCCAATATGCATGGAAGCATTCACAGGCCACATGGGCAA 1199
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct 1183 GGCGGCTCATCCAGGACTCATCCCAATCTGCATGGAAGCATTCACTGGTCACATGGGAAA 1242
Query 1200 AAGTCCAAACCAAATCAAATCAGTGAAGCGCGAAGATGCATCCGCGATAACAGAGGAAGA 1259
||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||
Sbjct 1243 AAGTCCAAACCAAATCAAATCAGTGAAGCGCGAGGACGCAGCCGCAATAACAGAGGAAGA 1302
Query 1260 TCTGCTTCAAATACCGCGAGGAGTGCGAACACTCGAGGGTCTAAGGCTGAACACACGTGT 1319
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1303 TCTGCTTCAAATACCGCGAGGAGTGCGTACACTCGAGGGTTTAAGGCTGAACACACGTGT 1362
Query 1320 GGGAATCCAATACTTAGCCGCGTGGTTAACAGGATCAGGATCTGTCCCACTATACAACCT 1379
||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1363 AGGAATTCAATACTTAGCCGCATGGTTAACAGGATCAGGATCTGTCCCACTCTATAACCT 1422
Query 1380 AATGGAAGACGCGGCTACGGCTGAGATAAGCCGAGTCCAGAACTGGCAATGGATTAGGTA 1439
||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1423 AATGGAAGATGCTGCTACGGCTGAGATAAGCCGTGTCCAGAATTGGCAATGGATTAGGTA 1482
Query 1440 TGGAGTGGAA-TTGGATGGAGACGGGCTCGGAGTTCGGGTGACTAAAGAGTTATTTGGGa 1498
|||||||||| ||| ||||||||||||| |||||||| |||| ||||||||| |||||||
Sbjct 1483 TGGAGTGGAACTTG-ATGGAGACGGGCTTGGAGTTCGAGTGAGTAAAGAGTTGTTTGGGA 1541
Query 1499 gagttgtggaagaagagatggaaagaattgagaaagaagttgggaaagacaagttcaaga 1558
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1542 GAGTTGTCGAAGAAGAGATGGAAAGAATTGAGAAAGAAGTTGGGAAAGACAAGTTTAAGA 1601
Query 1559 aaggaaTGTATAAGGAAGCTTGCAAGATGTTTACAAAGCAGTGTACCGCACCTGAACTTG 1618
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1602 ATGGAATGTATAAGGAAGCTTGCAAGATGTTTACAAAGCAGTGTACTGCACCTGAGCTTG 1661
Query 1619 ACGATTTCCTCACACTTGCCGTCTACAATCACATTGTAGCTCACTACCCTATCAATAACT 1678
| ||||| || |||||||| || || |||||||||||||||||||||||||||||| ||
Sbjct 1662 ATGATTTTCTTACACTTGCTGTTTATAATCACATTGTAGCTCACTACCCTATCAATGTCT 1721
Query 1679 CTAGGCTCTGA 1689
| |||||||||
Sbjct 1722 CAAGGCTCTGA 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5