BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892302

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50420.1 | Symbols:  | O-fucosyltransferase family protein |...   296    7e-80


> AT5G50420.1 | Symbols:  | O-fucosyltransferase family protein 
| chr5:20530206-20532856 REVERSE LENGTH=2169
Length=2169

 Score =  296 bits (160),  Expect = 7e-80
 Identities = 182/193 (94%), Gaps = 0/193 (0%)
 Strand=Plus/Plus

Query  69   CAAGGAATCTGAGCTTCGTGCTTTGTATCTTCTGAGACAACAACATCTTTCGCTTCTCTC  128
            ||| ||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||
Sbjct  539  CAAAGAATCTGAGCTTCGTGCTTTGTATCTTCTGAGACAACAACAGCTCGCGCTTCTATC  598

Query  129  TCTTTGGAATGGTACGTTGGTGAATCCTTCTCTTAATCAATCGGAGAATGCTTTGGGATC  188
            |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct  599  TCTTTGGAATGGTACGTTGGTGAATCCTTCTCTTAATCAATCTGAGAACGCTTTGGGATC  658

Query  189  ATTTGTGTTGTTTGAGGATGTGAAATCTGCTGTTTCGAAGCAGATTTCATTGAATAAAGA  248
             | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  659  GTCTGTTTTGTTTGAGGATGTGAAATCTGCTGTTTCGAAGCAGATTTCATTGAATAAGGA  718

Query  249  GATCCAAGAGGTG  261
            |||||||||||||
Sbjct  719  GATCCAAGAGGTG  731



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5