BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892333
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04150.1 | Symbols: BHLH101 | basic helix-loop-helix (bHLH) ... 1053 0.0
> AT5G04150.1 | Symbols: BHLH101 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:1138559-1139476 REVERSE
LENGTH=723
Length=723
Score = 1053 bits (570), Expect = 0.0
Identities = 679/729 (93%), Gaps = 17/729 (2%)
Strand=Plus/Plus
Query 1 ATGGAGTATCCATGGCTGCAGTCTCAAGCTGATTCCTTTTCTCCTACTCTCCAATATCTT 60
|||||||||||||||||||||||||||| | |||||||||| |||||||||| || | ||
Sbjct 1 ATGGAGTATCCATGGCTGCAGTCTCAAGTTCATTCCTTTTCACCTACTCTCC-AT-T-TT 57
Query 61 CCTTCTTTCCTTTATCCTTTAGATGATTCCAAGAGCTATAACATCAATCTTTATCCTCAT 120
||||| |||||| ||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 58 CCTTCCTTCCTTCATCCTTTAGATGATTCCAAGAGCCATAACATCAATC----T--TCAT 111
Query 121 CATAT-ACGTCTTACTCGACACAGCAATGATACTAACAGTAACTGTAACAATGATCAAGA 179
||||| | |||||| | ||||||||| |||||||||||||| ||||||| |||||||
Sbjct 112 CATATGA-GTCTTA---GTCACAGCAATAATACTAACAGTAACAATAACAATTATCAAGA 167
Query 180 AGAAGTTCGAGGAAC--T-GTTTTGGAGAAGAAACTGAATCACAACGCAAGCGAACGAGA 236
||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 168 AGAAGATCGAGGAGCGGTGGTTTTGGAGAAGAAACTGAATCACAACGCAAGCGAACGAGA 227
Query 237 CCGCCGTAGAAAGCTTAACGCCTTGTACTCTTCACTTCGTGCTCTCTTGCCTCTTTCTGA 296
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 CCGCCGTAGAAAACTTAACGCCTTGTACTCTTCACTTCGTGCTCTCTTGCCTCTTTCTGA 287
Query 297 CCAAAAGAGGAAGCTGAGTATTCCGATGACGGTAGCGAGAGTGGTGAAGTACATACCAGA 356
||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 288 TCAAAAGAGGAAGCTGAGCATTCCTATGACGGTAGCGAGAGTAGTGAAATACATACCAGA 347
Query 357 GCAGAAGCAAGAACTTCAACGTTTGTCTCGGAGAAAAGAAGAGCTCTTGAAGAGAATCTC 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 348 GCAGAAGCAAGAACTTCAACGTTTGTCTCGGAGAAAAGAAGAGCTCTTGAAGAGGATCTC 407
Query 417 GAGAAAAACTCACCAAGAACAGCTGAGAAACAAAGCAATGATGGACTCAATAGAATCTTC 476
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 408 GAGAAAAACTCACCAAGAGCAGCTGAGAAACAAAGCAATGATGGACTCAATAGATTCTTC 467
Query 477 TTCCTCCCAACGGATTGCAGCAAACTGGCTCACTGACACTGAGATTGCTGTCCAGATTGC 536
|||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 468 TTCCTCTCAACGGATCGCAGCAAATTGGCTCACTGACACAGAGATTGCTGTCCAGATTGC 527
Query 537 TACATCGAAATGGACATCTGTCTCCGACATGTTGCTTAGGTTAGAAGAAAACGGGCTTAA 596
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 528 TACGTCGAAATGGACATCTGTTTCAGACATGTTGCTTAGGTTAGAAGAAAACGGGCTTAA 587
Query 597 TGTCATAAGCGTCTCTTCTTCAGTTTCTTCAACCGCAAGGATCTTCTACACTCTACATCT 656
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 588 TGTCATAAGCGTCTCTTCTTCCGTTTCTTCCACCGCAAGGATCTTCTACACTCTACATCT 647
Query 657 TCAGATGAGAGGAGATTGCAAAGTGAGACTGGAGGAACTCATCAATGGTACGCTCTTGGG 716
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 648 TCAGATGAGAGGAGATTGCAAAGTGAGACTGGAGGAACTCATCAATGGTATGCTCTTGGG 707
Query 717 ATTAGGCCA 725
|||| ||||
Sbjct 708 ATTACGCCA 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5