BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892358
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01150.1 | Symbols: | Protein of unknown function (DUF674) ... 403 1e-111
> AT5G01150.1 | Symbols: | Protein of unknown function (DUF674)
| chr5:51988-53817 FORWARD LENGTH=1674
Length=1674
Score = 403 bits (218), Expect = 1e-111
Identities = 352/413 (85%), Gaps = 23/413 (6%)
Strand=Plus/Plus
Query 19 TACAAATCGCTAAGTTCATGTTTGGAGAAAAAAGAAGATGAAGCAGAACCGGAGAAGGTA 78
|||||||||| |||| |||||||||||||||||||||||||||||||||| || || |
Sbjct 730 TACAAATCGCAAAGTCCATGTTTGGAGAAAAAAGAAGATGAAGCAGAACCTGA-AAAG-- 786
Query 79 GTAGTAACTTTGAAAGCAATCGTTAGGAAGCAAGACATAAATATTTTATTCGTTGAATGC 138
|||||||||||||||||| | || |||||||| ||||| || |||||||| |||||||||
Sbjct 787 GTAGTAACTTTGAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATTTGTTGAATGC 846
Query 139 GGAGAGGAATTTGTTGAGCTTCTTTTATCTTTTCTTGCTGTCCCGCTTAAATCTGTATGG 198
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||
Sbjct 847 GGAGAGGAATTTGTTGAGCTTCTTTTCTCTTTTATTGCTGTCCCGCTTGAATCTGCATGG 906
Query 199 GAAATCTCTGGCAGCGGTATCTCTTTAGGTTGCATTGGAAACTTGTGTAGAAGCTTCAGT 258
||||||||||||||| ||||||| ||||||||||| |||||| ||||||||| ||||||
Sbjct 907 GAAATCTCTGGCAGCAGTATCTCCTTAGGTTGCATAGGAAACATGTGTAGAACCTTCAGG 966
Query 259 GACTTAAACGCTAATAAGGGGACTGAACTGTCAACTTCAACATGCGCA-TTACCGTCTTT 317
|||||||| | | || |||| || |||||||||| ||||||||| || ||||||||
Sbjct 967 GACTTAAATG--A----GGAGACTCAAATGTCAACTTCCACATGCGCACTT-CCGTCTTT 1019
Query 318 TTATAGATT-CCAGATGCAGGTGCCCCGTATCATCACTCAACAACCTCCAGTATACTACC 376
|||| ||| ||||||||| |||| |||| ||||||||||||||||| || |||||||
Sbjct 1020 CTATA-ATTTCCAGATGCAACTGCCTGGTATTATCACTCAACAACCTCCGGTGTACTACC 1078
Query 377 GCTACA--C-C---GATTGCAGGCAAGTGAGCTATGGATGGTGTGACTACAAA 423
| |||| | | |||| ||||||| ||| |||||| | | ||||||||||
Sbjct 1079 GTTACAGGCTCTACGATTACAGGCAAATGAACTATGG-T--T-TGACTACAAA 1127
Score = 316 bits (171), Expect = 1e-85
Identities = 199/213 (93%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 419 ACAAAATCGTTCGGGTGGATTTGATGGATCCCAAATCCCGTGGCAGTGATAAGTCTACTC 478
||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||
Sbjct 1157 ACAGAATCGTTCGGGTGGATTTGAAGGATCCCAAATCCCGTGGCAGCGATAAGTCTGCTC 1216
Query 479 ATGGGTTCTTGAAGAAAGAGACAAAGTTTACTGTCTTAGATGATCTGACCATTACATCTA 538
| |||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1217 AGGGGTTCTTGAAGAAAGCGACAAAGTGTACTGTATTAGATGATCTGACCATTACATCTA 1276
Query 539 TGAACTCCTGCTCCTCAGTTTGCTTACTAAAGAAGTTACAGAGTCACGCAGACGATCTAG 598
|||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1277 TGAACTCCTGCTCCACAGTTTGTTTACTAAAGAAGTTGCAGAGTCACGCAGACGATCTAG 1336
Query 599 AGGTGCAAGTAGTTAGCATTAGCAATGCAGAGG 631
||||||||||| |||| || |||||||||||||
Sbjct 1337 AGGTGCAAGTAATTAGTATCAGCAATGCAGAGG 1369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5