BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892385
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06970.1 | Symbols: | Protein of unknown function (DUF810) ... 568 6e-161
> AT5G06970.1 | Symbols: | Protein of unknown function (DUF810)
| chr5:2158228-2166398 REVERSE LENGTH=3781
Length=3781
Score = 568 bits (307), Expect = 6e-161
Identities = 383/419 (91%), Gaps = 7/419 (2%)
Strand=Plus/Plus
Query 668 TGATTTTGAGGACGATGATGATCTTGAGGAAGTTGGTAATTTCAGGATCTCAAGGCGAAC 727
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 743 TGATTTTGAAGACGATGATGATCTTGATGAAGTTGGTAATTTCAGGATCTCTAGGCGGAC 802
Query 728 TGCCGATGATGCGGCTGATCTTGTGCCAAAG-CTGCCCCTCCTTTGCGACTGGTATTACA 786
||| ||||||| |||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 803 TGCAAATGATGCTGCTGATCTTGTGCC-AAGACTG-CCCTCCTTTGCGACTGGTATTACC 860
Query 787 GATGATGATCTCTGTGAAACTGCATTTGAAATCCTGTTGGGTGGCGCTGGAGCTTCA-G- 844
|||||||||||| ||||||||||||||||||| || |||| | |||||||||||||| |
Sbjct 861 GATGATGATCTCCGTGAAACTGCATTTGAAATACTTTTGGCTTGCGCTGGAGCTTCAGGA 920
Query 845 GGTCTCATAGCACCATCAAAAGAGaaaaaaaaaaGGAGAAGAGCAGGTCTAGGCTGAAGA 904
|||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||| |
Sbjct 921 GGTCTCATAGTACCATCAAAAGAG--AAAAAGAAGGAGAAAAGCAGGTCTAGGCTGATTA 978
Query 905 GGAAGCTTGGTCGCAAAAGTGAGAGTGTTTCTCAGTCTCGGAGTTCATCAGGATTGGTTG 964
||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 979 AGAAGCTTGGTCGCAAAAGTGAGAGTGTTTCTCAATCTCAGAGCTCATCAGGATTGGTTT 1038
Query 965 CCCTTTTAGAAATGATGAGGGGCCGAATGGAGATTTCTGAGGCCATGGACATCAGAACAA 1024
| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1039 CTCTTTTAGAAATGATGCGGGGCCAAATGGAGATTTCTGAGGCCATGGACATCAGAACAA 1098
Query 1025 GACAGGGGTTGCTTGATGCCCTAGCGGGGAAAGTTGGCAAAAGAATGGACAGCCTCCTG 1083
|||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1099 GACAAGGGTTGCTTAATGCCCTAGCGGGAAAAGTTGGCAAAAGAATGGACAGCCTCCTG 1157
Score = 171 bits (92), Expect = 2e-41
Identities = 102/107 (95%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1086 AAACATGTTAGCAGAGAGGCTCATTAACAATCCAGTTGTTGGGTGTGGAGAATCAGGTCG 1145
|||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1241 AAACATGTTAGCAGAGGGGCTCATTAACAATCCAGTTGTTGGATTTGGAGAATCAGGTCG 1300
Query 1146 TAGGGCAACTGACCTGAAGAGTCTTCTGCTAAGGATTGAAGGATCAG 1192
|| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1301 TAAGGCAACTGACCTGAAGAGTCTTCTGCTAAGGATTGAAGAATCAG 1347
Score = 119 bits (64), Expect = 8e-26
Identities = 74/79 (94%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 551 TGAATAGCGTGGGTACTGCTGATGAATTCTTTTTGGCTGCAAATCTTGAATCTTCTGGCT 610
|||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 520 TGAACAGCGTGGGTACTGCTGATGAATTCTTTTTGGCTACAATTCCTGAATCTTCTGGCT 579
Query 611 CACCTCCAAAAAGGTCCCC 629
|||||||||||||| ||||
Sbjct 580 CACCTCCAAAAAGGGCCCC 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5