BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892416
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04980.2 | Symbols: | DNAse I-like superfamily protein | ch... 2263 0.0
AT2G01900.1 | Symbols: | DNAse I-like superfamily protein | ch... 63.9 4e-09
> AT5G04980.2 | Symbols: | DNAse I-like superfamily protein |
chr5:1468575-1470772 REVERSE LENGTH=1489
Length=1489
Score = 2263 bits (1225), Expect = 0.0
Identities = 1351/1411 (96%), Gaps = 11/1411 (1%)
Strand=Plus/Plus
Query 1 ATGTCGGATCCACTCTATATATTTAATAGGTCTCAATCCGAGATAGTAATTGAATCTCTT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 89 ATGTCGGATCCACTCTATATATTTAATAGGTCTCAATCCGAGATAGTAGTTGAATCTCTT 148
Query 61 TTAGCTTCAAGCAATCTCAGATCTTCAATGCCCACTCAGCAAATCCAATCCTTAAGAGTC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 149 TTAGCTTCAAGCAATCTCAGATCTTCAATGCCTACTCAGCAAATCCAATCCTTAAGAGTC 208
Query 121 TTTGTGGCGACATGGAACGTGGGAGGAAAATCTCCACACTCTGGTCTTAATCTCGATGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 209 TTTGTGGCGACATGGAACGTGGGAGGAAAATCTCCACACTCTGGTCTTAATCTTGATGCT 268
Query 181 TTGCTTCACGTCCACAGCGAATAT-GATATATACGTTTTAGGTTTTCAGGAGATTGTTCC 239
||||||||||| || || |||| | ||| |||||||||||||||||||||||||||||||
Sbjct 269 TTGCTTCACGTGCATAGTGAAT-TCGATGTATACGTTTTAGGTTTTCAGGAGATTGTTCC 327
Query 240 ATTGAATGCTGGAAATGTCCTTGTTCTTGGAGACAACGAGCCTGCTGCGAAATGGTTAGC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 ATTGAATGCTGGAAATGTCCTTGTTCTTGGAGACAACGAGCCTGCTGCGAAATGGTTAGC 387
Query 300 TATGATCAATCAATCCTTGAACAAGTCATCATCAACATCATCTTCTGGAGGAAGACTTGG 359
||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
Sbjct 388 GATGATCAATCAATCCTTAAACAA---ATCATCA---TCATCTTCTGGAGGAAGACTTAG 441
Query 360 TCCAAAAACTCCATCTTTTGGCGCTGGATCTATGTTCTTTGCAAAACCTTCTTTGAAGAA 419
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 442 CCCAAAAACTCCATCTTTTGGCGCTGGATCGATGTTCTTTGCGAAACCTTCTTTGAAGAA 501
Query 420 GATCAGTGAGAGTTTCAGAACAGAATGCAGGAGAAAGCTGAAGATCTGTAACTGCAGCAC 479
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 502 GATTAGTGAGAGTTTCAGAACAGAGTGCAGGAGAAAGCTGAAGATCTGTAACTGCAGCAC 561
Query 480 TTTCTCTGAAGAGATTGTAAAAAAGTATGGGAGAGAATCTTGTTTCAGATGTCCAGAAGG 539
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 562 TTTCTCTGAAGATATTGTAAGAAAGTATGGGAGAGAATCTTGTTTCAGATGTCCTGAAGG 621
Query 540 TCTAGTTAACCAATCCGGTGTACTTTCtgatgacgaagaagacgaagatgatgatgacga 599
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 622 TCTAGTTAACCAATCCGGTGTACTTTCTGATGACGAAGAAGATGAAGATGATGA---CGA 678
Query 600 tgatgatgaagacgaggatgaagGAGGAGGAAAAGTTGCTTCTCTTGTAAGCAACCAAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TGATGATGAAGACGAGGATGAAGGAGGAGGAAAAGTTGCTTCTCTTGTAAGCAACCAAAT 738
Query 660 GATGATGAAGTATGGCTTAGTAGCATCAAAGCAAATGGTGGGAATATTCCTCACTGTGTG 719
|| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 739 GACGATGAAGTATGGCTTAGTAGCATCAAAGCAAATGGTGGGTATATTCCTTACTGTGTG 798
Query 720 GATGAGAAAGGAACTTATTCAACACGTTTCTCATCTCAGAATCTCCAGCGTCACCCGCGG 779
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 799 GATGAGAAAGGAACTTATTCAACACGTTTCTCATCTCAGAATCTCCTCCGTCACCCGCGG 858
Query 780 AATCATGGGTTGCTTAGGAAACAAGGGATGCATAGCTGTGAGTTTGCAGCTCTACAAGAC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AATCATGGGTTGCTTAGGAAACAAGGGATGCATAGCTGTGAGTTTGCAGCTCTACAAGAC 918
Query 840 TAGCTTCTGCTTCATCTGCAGTCATCTAGCTTCTGGTGAGAGAGAAGGAGACGAACGTCG 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 919 GAGCTTCTGCTTCATCTGCAGTCATCTAGCTTCTGGTGAGAGAGAAGGAGACGAACGCCG 978
Query 900 CAGAAACTCAGATGTGATCGAGATTCTCAAGAACACAACTTTCCCTAGAATCTGCAGAAC 959
|||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 979 CAGAAACTTAGATGTGATCGAGATTCTCAAGAACACAAGTTTCCCTAGAATATGCAGAAC 1038
Query 960 TTCTTTTACTCGTGTCCCTGATCGAATCACTAAGCATGATCGGGTCATATGGCTCGGAGA 1019
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1039 CTCTTTTACTCGTGTCCCTGATCGAATCACAAAGCACGATCGGGTCATATGGCTTGGAGA 1098
Query 1020 TTTGAACTACAGAATAGCTTTGAGTTACTCAGAAACAAAGACGCTCTTGGATAAAAACGC 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1099 TTTGAACTACAGAATAGCTTTGAGTTACTCAGAAACAAAGACCCTCTTGGATAAAAACGC 1158
Query 1080 TTGGGACACTCTTCTTAACAAAGATCAGCTCAAGATTGAAAGAGACGCAGGTCGAGTGTT 1139
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TTGGGACACTCTTCTCAACAAAGATCAGCTCAAGATTGAAAGAGACGCAGGTCGAGTGTT 1218
Query 1140 CAAAGGATGGCACGAAGGCAAAATCTTCTTCGCACCAACTTATAAGTATTCTTATAACTC 1199
|||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1219 CAAAGGATGGCATGAAGGAAAAATCTTCTTTGCACCAACTTATAAGTACTCTTATAACTC 1278
Query 1200 TGATGCTTACGCCGGAGACACTACCAAAGAAAAGAAGAACAAGAGAAGAACTCCTGCTTG 1259
|||||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 1279 TGATGCTTACGCGGGAGACACTAGCAAAGAAAAGAAGAACAAGAGAAGAACTCCGGCCTG 1338
Query 1260 GTGCGATAGGATTCTTTGGCACGGGGATGGAATCCGGCAGCTCTCGTACGTGCGCGGCGA 1319
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1339 GTGCGATAGGATTCTTTGGCACGGTGATGGAATCCGGCAGCTCTCGTACGTGCGCGGCGA 1398
Query 1320 GTCACGATTCTCTGATCACCGGCCGGTTTGCTCCGTATTTGTCGTCGACGTTGAGGTTTG 1379
|||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1399 GTCACGTTTCTCCGATCATCGGCCGGTTTGCTCCGTGTTTGTCGTCGACGTTGAGGTTTG 1458
Query 1380 CGAGGGTAAAACCGGAACTAGAAGACAATAA 1410
||||||||||||||||||||| |||||||||
Sbjct 1459 CGAGGGTAAAACCGGAACTAGGAGACAATAA 1489
> AT2G01900.1 | Symbols: | DNAse I-like superfamily protein |
chr2:405918-409014 FORWARD LENGTH=1553
Length=1553
Score = 63.9 bits (34), Expect = 4e-09
Identities = 117/155 (75%), Gaps = 14/155 (9%)
Strand=Plus/Plus
Query 776 GCGGAATCATGGGTTGCTTAGGAAACAAGGGATGCA-TAGCTGTGAG-TTTGCAGCT-CT 832
|||| |||||||||||||||||||||||||||| || || | || || ||| || | |
Sbjct 778 GCGGCATCATGGGTTGCTTAGGAAACAAGGGAT-CAGTATCGGTTAGATTT-CAATTGC- 834
Query 833 AC-AAGACTAGC-TTCTGCTTCATCTGCAGTCATCTAGCTTCTGGTGAGA-GAGAAGGAG 889
|| || || | | || || ||| | || || |||||||||||||||| | | || |||
Sbjct 835 ACGAA-ACGA-CATTTTGTTTCGTTTGTAGCCATCTAGCTTCTGGTG-GCCGCGACCGAG 891
Query 890 ACGAACGTC-GCAGAAACTCAGATGTGATCGAGAT 923
| ||| | | | |||||||| || || | ||||||
Sbjct 892 ATGAAAGACAG-AGAAACTCCGACGTCAACGAGAT 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5