BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892421

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37900.1 | Symbols:  | Protein of unknown function (duplicat...   320    9e-87
  AT4G38240.1 | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-gly...   206    3e-52


> AT4G37900.1 | Symbols:  | Protein of unknown function (duplicated 
DUF1399) | chr4:17821737-17824627 REVERSE LENGTH=2428
Length=2428

 Score =  320 bits (173),  Expect = 9e-87
 Identities = 192/201 (96%), Gaps = 2/201 (1%)
 Strand=Plus/Plus

Query  39   GGTTTCAAGAGCTCATGTAGATAATGACGTCTTTCTACAAGAAGCTGTGGCTAGATACAA  98
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  598  GGTTTCAAGAGCTCATGTAGATAATGACGTCTTTCTGCAAGAAGCTGTGGCTAGATACAA  657

Query  99   AGTATTTCTCTACTTGATCAAAGGTAACCGAGAAAGGTCGATTAAACTTTTCTGTGTTCC  158
            || |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct  658  AGCATTTCTCTACTTGATCAAGGGTAACCGAGAAAGATCGATCAAACTTTTCTGTGTTCC  717

Query  159  GACTTACGATATTGATCTTATCTGGCACACACATCAGCTTCATGCTCA-CTCCTACTGCA  217
            |||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||||
Sbjct  718  GACTTACGATATTGATCTTATCTGGCACACACATCAGCTTCATGCT-ATCTCTTATTGCA  776

Query  218  ATGATTTGACTAAGATGATTG  238
            |||||||||||||||||||||
Sbjct  777  ATGATTTGACTAAGATGATTG  797


> AT4G38240.1 | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-glycoprotein 
beta-1,2-N-acetylglucosaminyltransferase, putative 
| chr4:17931570-17935325 REVERSE LENGTH=1813
Length=1813

 Score =  206 bits (111),  Expect = 3e-52
 Identities = 125/132 (95%), Gaps = 0/132 (0%)
 Strand=Plus/Plus

Query  334  GATGGATCTGATCAAGCCGTCAAGATCAAGGCCTTGAGCTATAATCAACTAACATATATG  393
            ||||||||||||||||| ||||||| |||| | ||||||||||||||| |||||||||||
Sbjct  546  GATGGATCTGATCAAGCTGTCAAGAGCAAGTCATTGAGCTATAATCAATTAACATATATG  605

Query  394  CAGCACTTGGATTTTGAACCAGTGATCACTGAAAGGCCTGGCGAACTGATTGCGTACTAC  453
            |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct  606  CAGCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTGCGTACTAC  665

Query  454  AAGATTGCACGT  465
            ||||||||||||
Sbjct  666  AAGATTGCACGT  677


 Score = 93.5 bits (50),  Expect = 2e-18
 Identities = 58/62 (94%), Gaps = 0/62 (0%)
 Strand=Plus/Plus

Query  530  GTCACTACAAGTGGGCACTGGACCAGTTGTTCTACAAACACAAATTTGGCCGAGTGACTA  589
            ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||
Sbjct  676  GTCACTACAAGTGGGCACTGGACCAGTTGTTTTACAAACACAAATTTAGTCGAGTGATTA  735

Query  590  TA  591
            ||
Sbjct  736  TA  737



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28583229643


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5