BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892422

Length=1017
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05420.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans i...   459    3e-128
  AT5G05430.1 | Symbols:  | RNA-binding protein | chr5:1605275-16...   267    2e-70 
  AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  62.1    1e-08 


> AT5G05420.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans 
isomerase family protein | chr5:1604040-1604823 REVERSE LENGTH=432
Length=432

 Score =  459 bits (248),  Expect = 3e-128
 Identities = 324/360 (90%), Gaps = 8/360 (2%)
 Strand=Plus/Plus

Query  661   ATGGCCCCATCTGAATCTGCTAAGAAGAAAGAGAAGACAAGTGAGGAAGCTACAGTGGAG  720
             ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct  1     ATGTCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAG  60

Query  721   TA-TAAAGCCATTTCTACTAGTGTTGAGAAGCAAACGCCTGACCCAGATGAG-CTCAATG  778
              | ||||||| |||||| |||||||||||||||||||||||||| ||||| | |||| ||
Sbjct  61    -AGTAAAGCCTTTTCTATTAGTGTTGAGAAGCAAACGCCTGACCTAGATG-GCCTCATTG  118

Query  779   TTGACGACTTGTGTATGGGCAACCCCAACGGCAAGAAAGCTG-GTCCTGGCAAAAGGGTT  837
             |||| || || || ||||| |||||||||||||||||||||| | |||||||||||||| 
Sbjct  119   TTGAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAG-CCTGGCAAAAGGGTA  177

Query  838   ACTGTCCATTATACTGGAAAGCTTCATGAAAATGGGAAGATTTTCGATTCCACTGTTGGA  897
             | |||||||||||||||||||||||| |  ||||||||||||||||||||||| ||||||
Sbjct  178   AGTGTCCATTATACTGGAAAGCTTCAGGGGAATGGGAAGATTTTCGATTCCACCGTTGGA  237

Query  898   AAATCTCCTTATAAGTTTCGTCTAGGTGTTGGAAAAGTCATTAAGGGATTGGATGTTGGT  957
             ||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||| 
Sbjct  238   AAATCACGTTATAAGTTTCGTCTAGATGCTGGAAAAGTCATTAAGGGATTGGATGTTGGC  297

Query  958   GTTAATGGAATG-TATGTTGGTGGCAAAAGAAAGCTTACCATTCCTCCAGCATTCGGGTA  1016
              ||||||||||| | |||||||||||||||||||||||| |||||||||| | | |||||
Sbjct  298   CTTAATGGAATGCT-TGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGAAATGGGGTA  356


> AT5G05430.1 | Symbols:  | RNA-binding protein | chr5:1605275-1606703 
REVERSE LENGTH=477
Length=477

 Score =  267 bits (144),  Expect = 2e-70
 Identities = 150/153 (98%), Gaps = 0/153 (0%)
 Strand=Plus/Plus

Query  36   TGACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCTCTTGATGATGTCTA  95
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct  60   TGACGTTGGGAGGATTAAGGTTACGGGATATGACACTGGTCTTCCGCTTGATGATCTCTA  119

Query  96   CACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTT  155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CACGGCGTTGGCAGAACATTTCTCTTCATGTGGAGAGATCTGGGAGATTTATATTCCCTT  179

Query  156  AAAATTTGATGAGACTAAGACGATTCTCAACAG  188
            |||||||||||||||||| ||||||||||||||
Sbjct  180  AAAATTTGATGAGACTAATACGATTCTCAACAG  212


 Score =  267 bits (144),  Expect = 2e-70
 Identities = 151/154 (98%), Gaps = 1/154 (1%)
 Strand=Plus/Plus

Query  438  CTCAGTTAGAGCTACTGTTCACGGAAAAGACGTAGCTGATACCGTGACTCAACTTAATGG  497
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  CTCAGTTAGAGCTGTTGTTCACGGAAAAGACGTAGCTGATACCGTGACTCAACTTAATGG  383

Query  498  GAGCTACATGCGAGGACGCAAATTAGCTGT-TTGGGTGACTGCCAAACCGGAAATACCTA  556
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  384  GAGCTACATGCGAGGACGCAAATTAGCTGTATTGGGTGACTGCCAAACCGGAAATACCTA  443

Query  557  TACGCCTCATTCGCCGCCGCGTCAATTTCAGTAA  590
            ||||||||||||||||||||||||||||||||||
Sbjct  444  TACGCCTCATTCGCCGCCGCGTCAATTTCAGTAA  477


 Score =  106 bits (57),  Expect = 5e-22
 Identities = 62/64 (97%), Gaps = 1/64 (2%)
 Strand=Plus/Plus

Query  252  AAG-TAACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATCCGGCAAACGCAA  310
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  260  AAGTTAACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATCCGGCACACGCAA  319

Query  311  ACGA  314
            ||||
Sbjct  320  ACGA  323


> AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966

 Score = 62.1 bits (33),  Expect = 1e-08
 Identities = 71/88 (81%), Gaps = 8/88 (9%)
 Strand=Plus/Plus

Query  55   GTTACGGGATATGACACTG-GTCTTCCTCTTGAT-GATGTCTACACGGCGT-TG-GCAGA  110
            ||||||||||||||| ||  | ||||||   ||| ||| || | | ||| | || | | |
Sbjct  649  GTTACGGGATATGACGCTTCG-CTTCCTGA-GATTGATATCCAGATGGC-TCTGTGTA-A  704

Query  111  ACATTTCTCTTCATGTGGAGAGATCTGG  138
            ||||||||||||||||||||||||||||
Sbjct  705  ACATTTCTCTTCATGTGGAGAGATCTGG  732



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49832273824


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5