BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892424
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03740.1 | Symbols: HD2C, HDT3 | histone deacetylase 2C | ch... 719 0.0
> AT5G03740.1 | Symbols: HD2C, HDT3 | histone deacetylase 2C |
chr5:981876-984200 FORWARD LENGTH=1242
Length=1242
Score = 719 bits (389), Expect = 0.0
Identities = 480/521 (92%), Gaps = 17/521 (3%)
Strand=Plus/Plus
Query 424 gatgattg-tgattttgaAGACTCTGGAGAGGAAGAGGAAGAGAAGCTTACTGCTGAAGC 482
||||| || |||| |||| |||||||||| || |||||||||||| ||||||||||| |
Sbjct 569 GATGA-TGATGATAGTGAAAACTCTGGAGACGAGGAGGAAGAGAAGGTTACTGCTGAATC 627
Query 483 TGACAGTGAGGAAGATGATGAAGATGACTCATCAGACGACGAAGTAGATGACTCATCAGA 542
||||||| || | ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 628 TGACAGT------GA-G--GAAGATGACTCATCAGACGACGAAGAAGATGACTCCTCAGA 678
Query 543 GGAGGAGACCCCAAAGAAGCCTGAAGCATCCAAGAAGAGATCTGCAGAAGCCAACTCCTC 602
||||| ||||||||||||||||||| | |||||||||| ||||||||| ||||||||||
Sbjct 679 AGAGGAAACCCCAAAGAAGCCTGAAGAACCCAAGAAGAGGTCTGCAGAACCCAACTCCTC 738
Query 603 CAAGAACCCTGC-TCCCAACAAGAAGGCTAAGTTTGAAACTCCTCAGAAAACAGATTCGA 661
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 739 CAAGAACCCTGCGT-CCAACAAGAAGGCTAAGTTTGTAACTCCTCAGAAAACAGATTCGA 797
Query 662 AGAAACCGCATGTCCATGTTGCAACTCCTCATCCATCAAAACAGGCGGGTAAGAATTCTG 721
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 798 AGAAACCGCATGTCCATGTTGCAACTCCTCATCCCTCAAAACAGGCGGGTAAGAATTCTG 857
Query 722 GTGGAAGCAGCATTGGAGAGACTTCGAAGCAGCAGCAGACACCGAAGTCTGCAGGAGCAT 781
||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 858 GTGGAGGCAGCACTGGAGAGACATCGAAGCAGCAGCAGACACCGAAGTCTGCAGGAGCGT 917
Query 782 TTGGGTGCAAGTCGTGCACCAGAACCTTCACTTCGGAAATGGGATTGCAGTCTCACACAA 841
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 918 TTGGGTGCAAGTCGTGCACCAGAACCTTTACTTCGGAAATGGGATTGCAGTCTCACAC-A 976
Query 842 AAGGCCAAACACAGTGCAGCTGCTTAAAAAGAAGAAGAAGCAGCTTGATGACTACTCTCT 901
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 977 AAGGCCAAACACAGTGCAGCTGCTT---GAGAAGAAGAAGCAGCATGATGACTACTCTCT 1033
Query 902 ATAATATCTACTCTAGAACTTTGATGTCTTTTGGTACTTAA 942
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 ATAATATCTACTCTAGAACTTTGATGTCTTTTGGTACTTAA 1074
Score = 281 bits (152), Expect = 7e-75
Identities = 183/198 (92%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 192 CATCTCTCAGGTTGCTTTAGGAGAGAATCAGAACAATGGAACCGAACCAATCCAGCTTTA 251
|||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||
Sbjct 193 CATCTCTCAGGTTGCTTTGGGAGAGAGTAAGAACAATGTAACCGAACCAATCCAGCTTTA 252
Query 252 CCTGA-TAGTTGGATCGGCTAAGCGTCTCATTGGAACGCTATCTCATGAGAGGTTTCCTC 310
| ||| | |||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 253 CGTGACT-GTTGGATCGGATAAGCTTCTCATTGGAACGCTATCTCATGAGAAGTTTCCTC 311
Query 311 AGCTGGCTACGGCGATTGTGTTGGAAAGGCACTTTTCGCTGTCTCATACTTGGAAGAATG 370
||||| |||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 312 AGCTGTCTACGGAGATTGTCTTGGAAAGGAACTTTGCGCTGTCTCATACTTGGAAGAATG 371
Query 371 GGAGCGTTTTCTTCTCtg 388
||||||||||||||||||
Sbjct 372 GGAGCGTTTTCTTCTCTG 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5