BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892425

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05420.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans i...   726    0.0  


> AT5G05420.1 | Symbols:  | FKBP-like peptidyl-prolyl cis-trans 
isomerase family protein | chr5:1604040-1604823 REVERSE LENGTH=432
Length=432

 Score =  726 bits (393),  Expect = 0.0
 Identities = 419/432 (97%), Gaps = 0/432 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAG  60
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAG  60

Query  61   AGTAAAGCCTTTTCTAGTAGTGTTGAGAAGCAAACGCCTGACCTAGATGGCCTCATTGTT  120
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGTAAAGCCTTTTCTATTAGTGTTGAGAAGCAAACGCCTGACCTAGATGGCCTCATTGTT  120

Query  121  AAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAGCCTGGCAAAAGGGTAAGT  180
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAGCCTGGCAAAAGGGTAAGT  180

Query  181  GTCCATTATACTGGAAAGCTTCAAGGGAATGGGAAGATTTTCGATTCCACCGTTGGAAAA  240
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  181  GTCCATTATACTGGAAAGCTTCAGGGGAATGGGAAGATTTTCGATTCCACCGTTGGAAAA  240

Query  241  TCACGTTATAAGTTTCGTCTAGGTGCTGGAAAAGTCATTAAGGGATTGGATGTTGGCGTC  300
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | 
Sbjct  241  TCACGTTATAAGTTTCGTCTAGATGCTGGAAAAGTCATTAAGGGATTGGATGTTGGCCTT  300

Query  301  AATGGCATGCGTGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGCAATGGGCTATGGT  360
            ||||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  301  AATGGAATGCTTGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGAAATGGGGTATGGT  360

Query  361  GCGGAAGGTGCTGGTAGCATTCCTCCTTACTCTTGGCTGGTCTTTGATGTCGAGCTGCTT  420
            ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct  361  GCGGAAGGTGCTGGTAGCATTCCCCCTGACTCTTGGCTGGTCTTTGATGTCGAGCTGCTT  420

Query  421  AATGTTAAATAA  432
            ||||||||||||
Sbjct  421  AATGTTAAATAA  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5