BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892430

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05660.1 | Symbols: ATNFXL2 | sequence-specific DNA binding ...   152    1e-36


> AT5G05660.1 | Symbols: ATNFXL2 | sequence-specific DNA binding 
transcription factors;zinc ion binding;sequence-specific DNA 
binding transcription factors | chr5:1690851-1695467 REVERSE 
LENGTH=2908
Length=2908

 Score =  152 bits (82),  Expect = 1e-36
 Identities = 105/116 (91%), Gaps = 1/116 (1%)
 Strand=Plus/Plus

Query  80    GTCAGGACATTCAGGAGACCACAAGGCTGCAGAAACTTGCTGTCGTTCACGAAGAGGATA  139
             ||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||
Sbjct  2453  GTCAGGACATTCAGGAGACCACAAGGCTGCAGAAACTTGCTGTCAC-CACAAAGAGGATA  2511

Query  140   CTGATGGCCGTGATGTTAATGGCAATGGGAGCCGCTGTTTCATACTATGGTTATAA  195
             ||||||| |||||||||| |||| |||  ||| ||||||||||||||||| |||||
Sbjct  2512  CTGATGGTCGTGATGTTAGTGGCGATGCTAGCTGCTGTTTCATACTATGGCTATAA  2567



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8651832372


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5