BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892438
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05150.1 | Symbols: ATATG18E, ATG18E, G18E | autophagy-relat... 1653 0.0
> AT5G05150.1 | Symbols: ATATG18E, ATG18E, G18E | autophagy-related
gene 18E | chr5:1524841-1526199 REVERSE LENGTH=1125
Length=1125
Score = 1653 bits (895), Expect = 0.0
Identities = 1042/1114 (94%), Gaps = 6/1114 (1%)
Strand=Plus/Plus
Query 1 ATGAATTCGATGGTCTCCACTGTCCGTGGAATATTCACGCTTTCAAAATCTGATAC-TTC 59
||||||||||| |||||||||||||||||||| || |||||||||| |||||| || |||
Sbjct 1 ATGAATTCGATTGTCTCCACTGTCCGTGGAATCTTAACGCTTTCAAGATCTGAAACTTTC 60
Query 60 AAATTCGCCATC-TGATGAAGCCAAGAGTGACTTGAAGGTGTTATCAGTAGCTTGGAACC 118
|||| ||| | ||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 61 -GATTCACCA-CGTGATGAAGCAAAAAGTGACTTGAAGGTGTTATCAGTAGCTTGGAACC 118
Query 119 AGGAATGGAGTGGTTTCATAGTTGGAACAAATCGCGGGTTCAATGTATATAGCTGCAAAC 178
||| ||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 119 AGGTATGCAGTGGTTTCATCGTTGGAACAAATCACGGTTTCAATGTATATAGCTGCAAAC 178
Query 179 CAATGATCAAGAAAAGCATCAGCCGTGAACCGCACGAATCAGGCTTCAAAGTCGCTGAGA 238
||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 179 CAATGATAAAGAAAAGCATCAGCCGTGCCCCGCACGAATCAGGCTTCAAAGTTGCTGAGA 238
Query 239 TGCTCTTCCTTTCTAACCTATTTGCTCTTGTTGGAAATGGTTATAACAATTCCGAGTATC 298
||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||| |
Sbjct 239 TGCTCTTCCTTTCTAACTTATTCGCTTTTGTTGGCAATGGTTATAACAATTCCGAGTACC 298
Query 299 CTCCTAACAAAGTCTTCGTTTGGGACGATCACAGATTTTGCTGCCTCCGTGAGCTCGCTT 358
||||||||||||| ||||||||||| ||| || || |||||||||| | |||||| |||
Sbjct 299 CTCCTAACAAAGTATTCGTTTGGGATGATTACCGAAATTGCTGCCTCAGCGAGCTCACTT 358
Query 359 TTAAATCAGAAGTTATCGCCGTGAAACTAACGAGAGAACACATTGTGGTTGTCCTGAAAC 418
||||||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 359 TTAAATCAGAAGTTATCGCTGTGAAACTAGCGAGAGAACACGTTGTGGTGGTCCTGAAAC 418
Query 419 AAAACATCTATGTCTACACTTTCAACAACCTTAAGGTTTACCGTCTGATCGAAACTCTCA 478
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||
Sbjct 419 AAAACATCTATGTCTACACTTTCAACAACCTTAAGGTTGACCGTGTGATCGAAACCCTCA 478
Query 479 TGAATCCGAAAGGACTGTGTTGCGTCACTCACGTTGAGTCGAAAGCAGTCTTGGCTTGTC 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGAACCCGAAAGGACTGTGTTGCGTCACTCACGTTGAGTCGAAAGCAGTCTTGGCTTGTC 538
Query 539 CCGGGTTTCATCCGGGACAAGTTCAGGTCCACAACTTGAGACGGAATGTAATCAAATTCA 598
||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 539 CCGGGTTTCATCCGGGACAAGTTCAGGTCCATGACTTGAGATGGAATGTTATCAAATTCA 598
Query 599 TCAAAGCACATGATTCTGCTATTGCTTGCATGACTTTTACTCTCGATGGAAGTCTCCTCG 658
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 599 TCAAAGCACATGATTCTGCTATAGCTTGCATGACTTTGACTCTCGATGGAAGTCTCCTCG 658
Query 659 CAACCGCTAGCACGAAAGGAACCCTGATCAGGATTTTTAACGCAGTTGATGGTACTCTCT 718
||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct 659 CAACCGCTAGCACCAAAGGAACTTTGATCAGGATCTTTAACGCCGTTGATGGTACTCTCT 718
Query 719 TACAAGAGTTGCGGAGAGGAATGGAAAGAGCAGAGATCTATAACGTTGCAATCTCTTCAA 778
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 719 TACAAGAGTTTCGGAGAGGAGTGGAAAGAGCAGAGATCTATAACGTTGCAATCTCTTCGA 778
Query 779 ATCGGAAATGGGTCGCTGCGTCAAGTGAAAAAGGGACTCTCCATGTATTTCGTTTGAGAC 838
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCTGAAATGGGTCGCTGCGTCAAGTGAAAAAGGGACTCTCCATGTATTTCGTTTGAGAC 838
Query 839 CTGACATTCTTAGTTTTAATCTGGCTTCTTCGTCGTCATTCATGAA-AGGGATCTTACCG 897
||||||||||||||||| ||| |||||| |||||||||||||| || || |||||||||
Sbjct 839 CTGACATTCTTAGTTTTGATCCGGCTTCATCGTCGTCATTCAT-AAGAGTGATCTTACCA 897
Query 898 AAGTACTTGTACGAAAATGAACGGTCGTTTGCTCAGTTCTCGTTGCCAGCTTCCACCAAG 957
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGTATTTGTACGAAAATGAACGGTCGTTTGCTCAGTTCTCGTTGCCAGCTTCCACCAAG 957
Query 958 TTCATTGTAGGTTTTGGATCAGAGAACACTGTTCTTCTCCTAGGCATCGATGGAAGTTTC 1017
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 TTCATTGTAGGTTTTGGATCAGAGAACACTGTTCTTCTCGTAGGCATCGATGGAAGTTTC 1017
Query 1018 AGGAGGTGCAAATTTGATCAAGCAGATGGAGGGCAGATGGTGGAATTGGAACACAAATAC 1077
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CGGAGGTGCAAATTTGATCATGCAGATGGAGGGCAGATGGTGGAATTGGAACACAAATAC 1077
Query 1078 TTCTTCTCCTTGCAAGAGACGGGCGACACAATGG 1111
||||||||||| |||||||||||| |||||||||
Sbjct 1078 TTCTTCTCCTTACAAGAGACGGGCAACACAATGG 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5