BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892441
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05180.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1066 0.0
> AT5G05180.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G10880.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:1536226-1538492 FORWARD LENGTH=1569
Length=1569
Score = 1066 bits (577), Expect = 0.0
Identities = 664/707 (94%), Gaps = 2/707 (0%)
Strand=Plus/Plus
Query 516 TGAGGTGAGTAGGGACTGTTTAGATGTGTCATATGCTGAGATCTCTAAGCTAAGGGAAAT 575
|||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct 690 TGAGGTGAGTAGGGACTGTTTAGATGTGTCATTTTCTGAAATCTCTAAGCTAAGGGAAAT 749
Query 576 GTTGTGTGATTGTCAGCAAAGTTTTTCTATTGAGATAACAAAA-TTGCAGACTGATATTA 634
|||||||||||||||||||| ||| |||||||||| ||||||| | | ||| | | || |
Sbjct 750 GTTGTGTGATTGTCAGCAAAATTTCTCTATTGAGAAAACAAAACTGGTAGA-TCAGATAA 808
Query 635 AGCATTCTGAGGCAGAGAAAATGGAGATGCAGAGAAAAGAGGTTGAGTTGCTAGCTGAAA 694
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 809 AGCATTCTGAGGCAGAGAAAATGGAGATGCAGAGGAAAGAGGTTGAGTTGCAAGCTGAAA 868
Query 695 ACAATGCATTGAAGACACATTTGGCCACACGTGGTGAGCATATTGAAGCATTAAACAAAG 754
|| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TCAGTGCATTGAAGACAGACTTGGCCACACGTGGTGAGCATATTGAAGCATTAAACAAAG 928
Query 755 ATTTCGACAAGCAGAAGCTGAGGTACGACATGTTAATGGCAGAGAAAGATGGAGTCTATG 814
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 929 ATTTCGACAAGCACAAGCTGAGGTACGACATGTTAATGGCAGAGAAAGACGGAGTATGTG 988
Query 815 CTGAAGTAGACAATCTAAAAGCAGAGATGAGATCAAGAGACATCCAAATTCAGCAAATGG 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CTGAAGTAGACAATCTAAAAGCAGAGATGAGATCAAGAGACATCCAAATTCAGCAAATGG 1048
Query 875 AGGAGCAACTTAACCAACTGGTCTATAAGCAGACCGAGCTTGTGTCTGAATCAAGAAATG 934
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1049 AGGAGCAACTTAACCAGCTGGTCTATAAGCAGACAGAGCTTGTGTCTGAATCAGGAAATG 1108
Query 935 CCAAGAACACTGTTGAGCAACTGAAAGCTGTGGTTAAAGAACTGGAGAATGAAGCAGAGA 994
||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1109 CCAAGAACACTGTTGAGGAACTGAAAGCTGTGGTTAAAGAACTGGAGATTGAAGTAGAGC 1168
Query 995 TGCAGAGTAAGGCTAAGAAAACTGTGGAGGAACTGAGAGCTACGGTGTGGGAACTGGAGA 1054
||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1169 TGCAGAGTAAGGCCAAGAAAACTGTGGAGGAACTGAGAGCTACGGTCTGGGAAATGGAGA 1228
Query 1055 AGCAAGCAGAGTTTCAGAGGAATGCGATATCAGAAGGAGAGGAAGAGAAACGAGAGGCGA 1114
|||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1229 AGCATGCAGAGTTGCAGAGGAATGCGATATCACAAGGAGAGGAAGAGAAACGAGAGGCGA 1288
Query 1115 TTAGACAGCTTTGTTTCTCTCTGGATCATTACAAAAGCGGATATAGACAGCTTTTGAGGT 1174
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1289 TTAGACAGCTTTGTTTCTCTCTGGATCATTACAAAAGCGGATATAAACAGCTTTTGTGGT 1348
Query 1175 TTCTTTCGGGTAATAACCAGCAACATCACGCAACCATAGTCGTGTGA 1221
||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct 1349 ATCTTTCGGGCAATAACCAGCAACATCAAACAACCATGGTCGTGTGA 1395
Score = 449 bits (243), Expect = 2e-125
Identities = 347/397 (87%), Gaps = 7/397 (2%)
Strand=Plus/Plus
Query 122 ATCATGATTCCGTCTCTTCTTATTCCGAGTTAGATTCGGAAACAGAGGCCTTTTACTCAT 181
|||||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 257 ATCATGATTCTAACTCTTCTTATTCCGATTTAGATTCGGACACGGAGGCCTTTTACTCAT 316
Query 182 CTCTTAACCATCACCTGGTCTCACCAGGGGCAATGGATAGCCATGACTTAGCTGCTGAAA 241
|| ||||||||||||| || ||||||||| |||||||||||||||||||| | | || |
Sbjct 317 CTTTTAACCATCACCTCGTATCACCAGGGTCAATGGATAGCCATGACTTATCCCCGGAGA 376
Query 242 AACAAATGAGTTATGATGACTTGATGAAGAAATATGTCCAGTGTGAGGAAGAGCTAAGGA 301
|||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||
Sbjct 377 AACAAATGAGTTATGAAGAATTGATGAAGAAATATGTCCAGTGTGAAGAAGAGCTTAGGA 436
Query 302 CTACGAGTTT-AAAGCTCCAAGAATCTGAACAAGAGATTGAGAAGCTTAAGAGTGAGACC 360
|||||||||| ||| || ||||||| ||| |||||||||||||| | ||| || ||||||
Sbjct 437 CTACGAGTTTGAAA-CTTCAAGAATTTGAGCAAGAGATTGAGAAAC-TAA-AG-GAGACC 492
Query 361 AAGAAGAAAGAATCTGATGTTCTGCTTACCGAGAATCTATGTGCTGAGCTTGAAACT-GC 419
|||| |||||||| | ||||||| || |||| ||||| ||| ||||| |||| | ||
Sbjct 493 GAGAAAAAAGAATCGGTTGTTCTGTTTGGCGAGTATCTACGTGGTGAGCGAGAAA-TCGC 551
Query 420 TCAGGGAGAAATTGAGACTAGGGACATAGCTATTGAGGCTGAGAGAAGGCGAGTTCTCCA 479
|| |||||||||| || ||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 552 ACAAGGAGAAATTGCGATTAGGGACATAGCTATTGAGACTGAGAGAAAGCGAGTTCTCGA 611
Query 480 GGTGCAAAGACAGGTGGTTGATTTGGAAACTGAACTT 516
||||||||||||||||||||||||||||||||| |||
Sbjct 612 GGTGCAAAGACAGGTGGTTGATTTGGAAACTGAGCTT 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5