BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892457

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05330.1 | Symbols:  | HMG-box (high mobility group) DNA-bin...   865    0.0  


> AT5G05330.1 | Symbols:  | HMG-box (high mobility group) DNA-binding 
family protein | chr5:1576982-1578754 REVERSE LENGTH=974
Length=974

 Score =  865 bits (468),  Expect = 0.0
 Identities = 536/569 (94%), Gaps = 4/569 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGATTCGGCCGAGAACTCGTAAAAGGGTTCAAGCAGTTCGTCGTGCTGCTGATGGA  60
            ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| 
Sbjct  101  ATGGCAATTCGGCCGAGAACTCGTAAAAGAGTTCAAGCTGTTCGTCGTGCTGCCGATGGT  160

Query  61   AGCGCTTTTAAGAAATGTGAAGAATGTGGTGTTATGATAGCGATTGCTCTGTTTGATATG  120
            ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  161  AGCGCTTTTAAAAAATGTGAAGAATGTGGTGTTATGATAGCGATTGCTCTGTATGATATG  220

Query  121  CATGAGTGCGGTGAGAAGAGAAGGGAAGTGAAGAGATTCAAGTACGTTGCCAGTGGCAAT  180
            ||||||||||||||||| |||||||||||||| || ||||||||| |||| |||||||||
Sbjct  221  CATGAGTGCGGTGAGAAAAGAAGGGAAGTGAAAAGGTTCAAGTACATTGCGAGTGGCAAT  280

Query  181  GTC-ATTAATATCTCGAAACCAATTGGGAGCTTTGAAGATGAACCCAGATCACCATTTGT  239
             || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  281  ATCGA-TAATATCTCGAAACCAATTGGGAGCTTTGAAGATGAACCCAGATCACCATTTGT  339

Query  240  CTTCTTCTTAGAGGATTTTAGGGAAAAGTACAATGGAGACTTAGTGGATGCTAGCAGAAT  299
            ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  340  CTTCTTCTTAGAGGAGTTTAGGGAAAATTACAATGGAGACTTAGTGGATGCTAGCAGAAT  399

Query  300  ATGTTTCAATGTATGGAAGAACATGTCACCAGAGGACCAAAAACCATTCAACGCCCGTGC  359
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  400  ATGTTTCAATGTATGGAAGAACATGTCAGCAGAGGACCAAAAACCATTCAACGCCCGTGC  459

Query  360  TATGGAGGTTGATTTGGCACACAGCAGAAAGTTAAACGAAGAAGCTAAAACTATTGATAA  419
            |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct  460  TATGGAGGTTGATTCGGCACACAGTAGAAAGTTAAACGAAGAAGCTAAAACCATTTATAA  519

Query  420  GGCAGATGATGAGGCAGATTCGAAAACTGTTGGGAGATATGACAAGTTCTATGAGAGCTA  479
            ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  520  GGCAGATGAAGAGGCAGATTCAAAAACTGTTGGGAGATATGACAAGTTCTATGAGAGCTA  579

Query  480  CGTTCATTAT-GAAGAAGAGGAGGACTATGATTCATCTGATCATTTTGGACATGAGTTTT  538
            ||||||  || ||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct  580  CGTTCAA-ATTGAAGAAGAGGAAGACTATGATTCATCTGATCATTTCGGACACGAGTTTT  638

Query  539  GGGAAGACGATACTCTGCTCGACTACTGA  567
            |||||||||||||| || | |||||||||
Sbjct  639  GGGAAGACGATACTATGTTGGACTACTGA  667



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5