BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892466 Length=510 Score E Sequences producing significant alignments: (Bits) Value AT5G05430.1 | Symbols: | RNA-binding protein | chr5:1605275-16... 185 3e-46 > AT5G05430.1 | Symbols: | RNA-binding protein | chr5:1605275-1606703 REVERSE LENGTH=477 Length=477 Score = 185 bits (100), Expect = 3e-46 Identities = 147/169 (87%), Gaps = 5/169 (3%) Strand=Plus/Plus Query 287 ACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATGACGA-AGATGCAAACGAC 345 ||||||||||||||||||||||||||||||||||||||||| || | | ||||||||| Sbjct 266 ACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATC-CGGCACACGCAAACGAC 324 Query 346 TCAGCTGGAGC-GATGATTTACGGAAAAGACGTAGCAGATAAGGTGACTGAACTTAATGG 404 |||| | |||| | || || |||||||||||||||| |||| |||||| |||||||||| Sbjct 325 TCAGTTAGAGCTGTTG-TTCACGGAAAAGACGTAGCTGATACCGTGACTCAACTTAATGG 383 Query 405 GAGCCACATGGGAGGACACAAATTAGCTGT-TCGGGTGACTGCTAAACC 452 |||| ||||| |||||| |||||||||||| | |||||||||| ||||| Sbjct 384 GAGCTACATGCGAGGACGCAAATTAGCTGTATTGGGTGACTGCCAAACC 432 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24363561295 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5