BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892466

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05430.1 | Symbols:  | RNA-binding protein | chr5:1605275-16...   185    3e-46


> AT5G05430.1 | Symbols:  | RNA-binding protein | chr5:1605275-1606703 
REVERSE LENGTH=477
Length=477

 Score =  185 bits (100),  Expect = 3e-46
 Identities = 147/169 (87%), Gaps = 5/169 (3%)
 Strand=Plus/Plus

Query  287  ACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATGACGA-AGATGCAAACGAC  345
            |||||||||||||||||||||||||||||||||||||||||  ||  | | |||||||||
Sbjct  266  ACGTGGGAGGATGGAATGTCTCTGTTGAGGCTTATCCGTATC-CGGCACACGCAAACGAC  324

Query  346  TCAGCTGGAGC-GATGATTTACGGAAAAGACGTAGCAGATAAGGTGACTGAACTTAATGG  404
            |||| | |||| | || || |||||||||||||||| ||||  |||||| ||||||||||
Sbjct  325  TCAGTTAGAGCTGTTG-TTCACGGAAAAGACGTAGCTGATACCGTGACTCAACTTAATGG  383

Query  405  GAGCCACATGGGAGGACACAAATTAGCTGT-TCGGGTGACTGCTAAACC  452
            |||| ||||| |||||| |||||||||||| | |||||||||| |||||
Sbjct  384  GAGCTACATGCGAGGACGCAAATTAGCTGTATTGGGTGACTGCCAAACC  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5