BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892490

Length=768
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05640.1 | Symbols:  | nucleoprotein-related | chr5:1684566-...   460    7e-129


> AT5G05640.1 | Symbols:  | nucleoprotein-related | chr5:1684566-1685812 
FORWARD LENGTH=1247
Length=1247

 Score =  460 bits (249),  Expect = 7e-129
 Identities = 336/377 (89%), Gaps = 10/377 (3%)
 Strand=Plus/Plus

Query  7    GAAGCTCTTAGCAGCTTTGATTTCAAAGAAGTTGCAGCTTCGCTTTCTGATCCCATCGCA  66
            |||||||||||||||||||| ||| | ||| ||| |||||||||| ||||| ||||||||
Sbjct  59   GAAGCTCTTAGCAGCTTTGACTTCGATGAACTTGTAGCTTCGCTTGCTGATGCCATCGCA  118

Query  67   CCAACATTGACTCAACACCAGTC-TT-GTGG-GTTTTCACCACATGATTTGTTGGCTGAA  123
             |||||| |||||  | | || | || ||||  ||||||| ||||| |||| ||||||||
Sbjct  119  GCAACATCGACTC--C-CAAGCCTTTGGTGGAATTTTCACTACATGCTTTGATGGCTGAA  175

Query  124  TTGTTTGAGAGAA-TGAAAACCTTACCCAAAGCTGAAGTCACCAATATATTCTTCAGAGC  182
            |||||| |||||| | ||||||||||||||||||||||||| ||  | ||||||||||||
Sbjct  176  TTGTTTAAGAGAACT-AAAACCTTACCCAAAGCTGAAGTCAGCAGGACATTCTTCAGAGC  234

Query  183  TGTTT-CAGTTGGCTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTG  241
            ||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct  235  TGTTTCCA-TTGGCTTGCTGAGAGGTAACATTAGGAAAGATCAACTGGAGAGAACTTGTG  293

Query  242  ATACTGGTAAAGCAACTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACA  301
            || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  ATGCTGGTAAAGCAATTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACA  353

Query  302  AGGGTCaaaaaaaGCTTGTTCTAACTAACAAAACTTTGACTTTCTCAAGAATGATAGCTC  361
            ||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| 
Sbjct  354  AGGGTCAAAGAAAGCTTGTTCTAACAAACAAAACTGTGACTTTCTCAAGAATGATAGCTA  413

Query  362  TTTTCCCTCATTTGGCt  378
            |||||||||| | ||||
Sbjct  414  TTTTCCCTCACTGGGCT  430


 Score =  250 bits (135),  Expect = 2e-65
 Identities = 160/171 (94%), Gaps = 5/171 (3%)
 Strand=Plus/Plus

Query  600   GAAGGCAAGTGTTACAAGAAG-CAGCTTTACGATCGTTGAAGATCGGGTCAAGATTGTAA  658
             ||| |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct  845   GAA-GCAAGTGTTACAAG-AGACAGCTTTACGATCGTTGAAGATCGGGTCAAGATCGTAA  902

Query  659   AAGATGATGCAAAGTGGCAGGAGCTATTG-AAAAAGACCAAGTGAATGGTTGATGCTTCA  717
             | ||||||||||||||| | ||||||||| |||||| ||||| |||| ||||||||||||
Sbjct  903   ATGATGATGCAAAGTGGGATGAGCTATTGAAAAAAG-CCAAGAGAATAGTTGATGCTTCA  961

Query  718   AGTTCAATGAGGTCTCAGGTTGCTGCTGTTGACTCCTTAGATGGAGTTTGA  768
             |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  962   AGTTCAATGAGGTCTCAGGTTGCTGCTGTTGACTCCTTAGATGGAGTTTGA  1012


 Score =  206 bits (111),  Expect = 3e-52
 Identities = 122/127 (96%), Gaps = 1/127 (1%)
 Strand=Plus/Plus

Query  382  tttCCTGCTCAAACTCACAAGCTTCCTATTGCTATGCTTCACTCTGGATTTGCTGGTCTG  441
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  500  TTTCCTGCTCAAACTCATAAGCTTCCTATTGCTATGCTTCACTCTGGATTTGCTGGTCTG  559

Query  442  ATTCCAAGAGAAAGTGATGATATGGAATTCATAGACCTCCTTTGCATTTGTCACTCTGCT  501
            ||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||
Sbjct  560  ATTCCAAGAGAAAGTGATGATATGGAATTCATAGACCTTATTTGCATGTGTCACTCTGCT  619

Query  502  TTTCATG  508
            || ||||
Sbjct  620  TT-CATG  625


 Score =  187 bits (101),  Expect = 1e-46
 Identities = 128/140 (91%), Gaps = 6/140 (4%)
 Strand=Plus/Plus

Query  195   CTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTGATACTGGTAAAGC  254
             ||||||||||||||||||||||||||||||||||||||||||||||||||     || ||
Sbjct  1114  CTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTGATA-----AA-GC  1167

Query  255   AACTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACAAGGGTCaaaaaaa  314
             |||| ||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct  1168  AACTCTCAAAAGAGTTACTGCAACTCTTGGGATTGTAATCAGAGACAAGGGTCAAAAAAA  1227

Query  315   GCTTGTTCTAACTAACAAAA  334
             | ||||||||||||||||||
Sbjct  1228  GATTGTTCTAACTAACAAAA  1247


 Score =  106 bits (57),  Expect = 4e-22
 Identities = 87/100 (87%), Gaps = 7/100 (7%)
 Strand=Plus/Plus

Query  501  TTTTCATGCACTGTACGAGAATCAGAAAAGATATACCGAGGCTGCTCG-GAAATTTGGAT  559
            |||||||||| ||||||||||||||||||||||||||||||||||||| | | | |||||
Sbjct  667  TTTTCATGCATTGTACGAGAATCAGAAAAGATATACCGAGGCTGCTCGTGGA-TCTGGAT  725

Query  560  TGA-TTCCTGATGAAGATAGGATCGGTTTCAACTTT-GAG  597
            | | ||| ||||||| ||||||||| ||| | |||| |||
Sbjct  726  TCAATTC-TGATGAAAATAGGATCG-TTT-ATCTTTTGAG  762



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37323971221


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5