BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892490 Length=768 Score E Sequences producing significant alignments: (Bits) Value AT5G05640.1 | Symbols: | nucleoprotein-related | chr5:1684566-... 460 7e-129 > AT5G05640.1 | Symbols: | nucleoprotein-related | chr5:1684566-1685812 FORWARD LENGTH=1247 Length=1247 Score = 460 bits (249), Expect = 7e-129 Identities = 336/377 (89%), Gaps = 10/377 (3%) Strand=Plus/Plus Query 7 GAAGCTCTTAGCAGCTTTGATTTCAAAGAAGTTGCAGCTTCGCTTTCTGATCCCATCGCA 66 |||||||||||||||||||| ||| | ||| ||| |||||||||| ||||| |||||||| Sbjct 59 GAAGCTCTTAGCAGCTTTGACTTCGATGAACTTGTAGCTTCGCTTGCTGATGCCATCGCA 118 Query 67 CCAACATTGACTCAACACCAGTC-TT-GTGG-GTTTTCACCACATGATTTGTTGGCTGAA 123 |||||| ||||| | | || | || |||| ||||||| ||||| |||| |||||||| Sbjct 119 GCAACATCGACTC--C-CAAGCCTTTGGTGGAATTTTCACTACATGCTTTGATGGCTGAA 175 Query 124 TTGTTTGAGAGAA-TGAAAACCTTACCCAAAGCTGAAGTCACCAATATATTCTTCAGAGC 182 |||||| |||||| | ||||||||||||||||||||||||| || | |||||||||||| Sbjct 176 TTGTTTAAGAGAACT-AAAACCTTACCCAAAGCTGAAGTCAGCAGGACATTCTTCAGAGC 234 Query 183 TGTTT-CAGTTGGCTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTG 241 ||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| ||| Sbjct 235 TGTTTCCA-TTGGCTTGCTGAGAGGTAACATTAGGAAAGATCAACTGGAGAGAACTTGTG 293 Query 242 ATACTGGTAAAGCAACTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACA 301 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 ATGCTGGTAAAGCAATTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACA 353 Query 302 AGGGTCaaaaaaaGCTTGTTCTAACTAACAAAACTTTGACTTTCTCAAGAATGATAGCTC 361 ||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 354 AGGGTCAAAGAAAGCTTGTTCTAACAAACAAAACTGTGACTTTCTCAAGAATGATAGCTA 413 Query 362 TTTTCCCTCATTTGGCt 378 |||||||||| | |||| Sbjct 414 TTTTCCCTCACTGGGCT 430 Score = 250 bits (135), Expect = 2e-65 Identities = 160/171 (94%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 600 GAAGGCAAGTGTTACAAGAAG-CAGCTTTACGATCGTTGAAGATCGGGTCAAGATTGTAA 658 ||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||| Sbjct 845 GAA-GCAAGTGTTACAAG-AGACAGCTTTACGATCGTTGAAGATCGGGTCAAGATCGTAA 902 Query 659 AAGATGATGCAAAGTGGCAGGAGCTATTG-AAAAAGACCAAGTGAATGGTTGATGCTTCA 717 | ||||||||||||||| | ||||||||| |||||| ||||| |||| |||||||||||| Sbjct 903 ATGATGATGCAAAGTGGGATGAGCTATTGAAAAAAG-CCAAGAGAATAGTTGATGCTTCA 961 Query 718 AGTTCAATGAGGTCTCAGGTTGCTGCTGTTGACTCCTTAGATGGAGTTTGA 768 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 962 AGTTCAATGAGGTCTCAGGTTGCTGCTGTTGACTCCTTAGATGGAGTTTGA 1012 Score = 206 bits (111), Expect = 3e-52 Identities = 122/127 (96%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 382 tttCCTGCTCAAACTCACAAGCTTCCTATTGCTATGCTTCACTCTGGATTTGCTGGTCTG 441 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 500 TTTCCTGCTCAAACTCATAAGCTTCCTATTGCTATGCTTCACTCTGGATTTGCTGGTCTG 559 Query 442 ATTCCAAGAGAAAGTGATGATATGGAATTCATAGACCTCCTTTGCATTTGTCACTCTGCT 501 |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 560 ATTCCAAGAGAAAGTGATGATATGGAATTCATAGACCTTATTTGCATGTGTCACTCTGCT 619 Query 502 TTTCATG 508 || |||| Sbjct 620 TT-CATG 625 Score = 187 bits (101), Expect = 1e-46 Identities = 128/140 (91%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 195 CTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTGATACTGGTAAAGC 254 |||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1114 CTTGCTGAGAGGTAACATAAGGAAAGATCAATTGGAGAGAACTAGTGATA-----AA-GC 1167 Query 255 AACTATCAAAAGAGTTGCTGCAATTCTAGGGATTGAAATCAGAGACAAGGGTCaaaaaaa 314 |||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||| Sbjct 1168 AACTCTCAAAAGAGTTACTGCAACTCTTGGGATTGTAATCAGAGACAAGGGTCAAAAAAA 1227 Query 315 GCTTGTTCTAACTAACAAAA 334 | |||||||||||||||||| Sbjct 1228 GATTGTTCTAACTAACAAAA 1247 Score = 106 bits (57), Expect = 4e-22 Identities = 87/100 (87%), Gaps = 7/100 (7%) Strand=Plus/Plus Query 501 TTTTCATGCACTGTACGAGAATCAGAAAAGATATACCGAGGCTGCTCG-GAAATTTGGAT 559 |||||||||| ||||||||||||||||||||||||||||||||||||| | | | ||||| Sbjct 667 TTTTCATGCATTGTACGAGAATCAGAAAAGATATACCGAGGCTGCTCGTGGA-TCTGGAT 725 Query 560 TGA-TTCCTGATGAAGATAGGATCGGTTTCAACTTT-GAG 597 | | ||| ||||||| ||||||||| ||| | |||| ||| Sbjct 726 TCAATTC-TGATGAAAATAGGATCG-TTT-ATCTTTTGAG 762 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37323971221 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5