BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892520

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05965.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   529    9e-150


> AT5G05965.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT2G39855.2); Has 30201 
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 
| chr5:1790788-1792634 REVERSE LENGTH=806
Length=806

 Score =  529 bits (286),  Expect = 9e-150
 Identities = 373/411 (91%), Gaps = 21/411 (5%)
 Strand=Plus/Plus

Query  1    ATGGACATCAAGAAAACCAAAGCTGC-T--TCGT--C-TTCTTCTTCATTTGATAATCTG  54
            |||||||||||||||||||||||||| |  || |  | ||||||||||||||||||||||
Sbjct  140  ATGGACATCAAGAAAACCAAAGCTGCTTCATCATCGCATTCTTCTTCATTTGATAATCTG  199

Query  55   TTTGGTCCTAAAGGATCAGCCTCTGCTTCATCTGCTTCTTCTTGTTCAACTATACTCGAC  114
            |||||||| |||||||||      |   ||||||||||||||||||||||||||||||||
Sbjct  200  TTTGGTCCGAAAGGATCA------G---CATCTGCTTCTTCTTGTTCAACTATACTCGAC  250

Query  115  TCCATTTTCCCTCCCCCGGTAGCAAGGAAGAAGGGAAGTCACACTGCTCCTGAAGTTCAA  174
            |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  251  TCCATTTTTCCTCCTCCGGTAGCAAGGAAGAAGGGCAGTCACACTGCTCCTGAAGTTCAA  310

Query  175  GGCAGCATCACTCTAGCCACTGCTAAAGATGAGAGAAGCAGCCATGAAAAGAGAGAATCA  234
            |||| |||| ||| |||||||| |   || ||| || |||||||||||||||||||||| 
Sbjct  311  GGCAACATCTCTCAAGCCACTGAT---GA-GAG-GA-GCAGCCATGAAAAGAGAGAATCC  364

Query  235  TCCTATTATAGCTCATCCATTTACTACGGAGGCCAGCAACATTATTCACCTCCACGAACC  294
            ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  365  TCCTACTATAGCTCATCCATTTACTACGGAGGCCAGCAACACTATTCACCTCCACGAACC  424

Query  295  GATGGCTCCTCCACTTCTCCATTTCATCAGCCCAAAGAAACCGATGATCGCACTGACACA  354
            ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
Sbjct  425  GATGGTTCCTCCACTTCTCCATCTCATCAGCCCAAAGAAACCAATGATCGCACTGACATA  484

Query  355  ACCACCTCTACTTCCAGAGGAAATTGGTGGAAAGGTTCTTTGTATTACTAA  405
            |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  485  ACCACCTCTACTTCAAGAGGAAATTGGTGGAAAGGTTCTTTGTATTACTAA  535



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5