BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892531
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06080.1 | Symbols: LBD33 | LOB domain-containing protein 33... 846 0.0
> AT5G06080.1 | Symbols: LBD33 | LOB domain-containing protein
33 | chr5:1830796-1831467 REVERSE LENGTH=574
Length=574
Score = 846 bits (458), Expect = 0.0
Identities = 509/534 (95%), Gaps = 2/534 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGGTCATGGATCATCTTGTGGAGCATGCAAGTTCCTAAGGAGGAAATGCAACCGC 60
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 41 ATGGCAAGTCATGGATCATCTTGTGGAGCATGCAAGTTTCTAAGGAGGAAATGCAACCGC 100
Query 61 GACTGTGTCTTCTCGCCTTACTTCAGCTACGAACAAGCCTCTTCCCATTTCGCAGCGGTC 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 GACTGCGTCTTCTCGCCTTACTTCAGCTACGAACAAGCCTCTTCCCATTTCGCAGCGGTT 160
Query 121 CACAAAGTCTTCGGCGCAAGCAATGTCTCTAAACATTTGCTTCATTTGCCTCTACATCAA 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 161 CACAAAGTCTTCGGCGCAAGTAATGTCTCTAAACATTTGCTTCATTTGCCTCAACATCAA 220
Query 181 AGAAGCGTCGCTGCTATCACCATCTCCTACGAGGCTCTCTCTCGCATGCGTGATCCTGTC 240
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 AGAAACATCGCTGCTATCACCATCTCCTACGAGGCTCTCTCTCGCATGCGTGATCCTGTT 280
Query 241 TATGGCTGCGTTGCTCACATCTTCGCTCTTCATCAACAGGTTGTGACTTTGCAAGAGGAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 281 TATGGCTGCGTTGCTCACATCTTCGCTCTTCATCAACAGGTTGTGACTTTGCAAGAAGAG 340
Query 301 ATTGAGTTTCTTGGATCACAGATGACGAATTTCTCATACTCTACTCAAAATGGATCACAA 360
||||||||||| || |||||||||| |||||| |||||||||| |||||| |||||||||
Sbjct 341 ATTGAGTTTCTCGGGTCACAGATGAAGAATTTTTCATACTCTAATCAAAACGGATCACAA 400
Query 361 CTTAACAACATACCGGAGTTTGTGAATCAGATGACTGTGGACACGACCAATTTCGTCGAT 420
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 401 CTTAACAACATACCGGAGTTTGTGAATCAGATGACTATGGCCACGACCAATTTCGTCGAC 460
Query 421 GAGAGTGTTTTAAACAATGTCGACGGAAGAAACTGCCT-TGATGGGTTCTTCACGAACTC 479
||||||||||| ||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 461 GAGAGTGTTTTGAACAATGCCGACGGAAGAAACTGC-TATGATGGGTTCTTCACGAACTC 519
Query 480 AGAGGAAATGCTCGTGAATCATCAATGGCTTCAGAACATGGATTATTATTACTA 533
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 520 AGAGGAAATGCTCGTGAATCATCAATGGCTCCAGAACATGGATTATTATTACTA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5