BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892543
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06200.1 | Symbols: | Uncharacterised protein family (UPF04... 981 0.0
AT3G11550.1 | Symbols: | Uncharacterised protein family (UPF04... 475 2e-133
> AT5G06200.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr5:1877333-1878116 FORWARD LENGTH=609
Length=609
Score = 981 bits (531), Expect = 0.0
Identities = 583/609 (96%), Gaps = 0/609 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGTGACTCAATCGCCGTTGATGTCCCTGCAGAGTCTAGCTCAGCCATCAAAGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGAAGAGTGACTCAATCGCCGTTGATGTCCCTGCAGAGTCTAGCTCAGTCATCAAAGGC 60
Query 61 AAAGCTCCTCTCCTTGGTTTAGCCAGAGACCACACGGGCTCAGGGGGTTACAAGAGAGGT 120
|||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 61 AAAGCTCCTCTCCTCGGTTTAGCCAGAGACCACACTGGCTCTGGAGGTTACAAGAGAGGC 120
Query 121 CTTTCCATTTTCGATTTCCTTCTCCGTTTAGCCGCCATTGTAGCTGCCTTAGCTGCTGCT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTTTCCATTTTCGATTTCCTTCTCCGTTTAGCTGCCATTGTAGCTGCCTTAGCTGCTGCT 180
Query 181 GCCACAATGGGGACTAGTGACGAGACTCTCCCTTTCTTCACTCAGTTTTTACAGTTCGAA 240
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 GCCACAATGGGAACTAGTGACGAGACACTCCCTTTCTTCACTCAGTTTTTGCAGTTCGAA 240
Query 241 GCTAGCTACGACGATCTTCCAACTTTCCAGTTCTTTGTGGTTGCCATTGCAATAGTCGCA 300
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 GCTAGCTACGATGATCTTCCAACTTTCCAGTTCTTTGTCGTTGCCATTGCAATAGTTGCA 300
Query 301 GGTTACCTTGTCCTGTCTCTTCCCTTCTCAGTCGTCACGATTGTTCGTCCTCTAGCCGTT 360
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 GGTTACCTTGTCCTGTCACTTCCCTTCTCAGTCGTCACAATTGTTCGTCCTCTAGCCGTC 360
Query 361 GCTCCGAGGCTCCTCTTGCTTGTTCTTGACACTGCGGCTCTGGCTCTGGACACTGCGGCT 420
|||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 361 GCTCCGAGACTTCTCTTGCTTGTTCTTGACACTGCGGCTCTGGCTTTGGACACTGCAGCT 420
Query 421 GCTTCTGCGGCAGCGGCTATAGTGTATTTGGCACACAATGGGAATACGAACACAAACTGG 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTCCGCGGCAGCGGCTATAGTGTATTTGGCACACAATGGGAATACGAACACAAACTGG 480
Query 481 CTTCCAATCTGCCAACAGTTTGGAGATTTCTGTCAGAAAACGAGCGGAGCTGTCGTCTCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 481 CTTCCAATCTGCCAACAGTTTGGAGATTTCTGTCAGAAAACGAGCGGAGCTGTGGTTTCT 540
Query 541 GCCTTTGCCTCTGTCACGTTTTTAGCCATCCTTGTCGTCATCTCCGGTGTCTCTCTCAAA 600
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 541 GCCTTTGCCTCTGTCACCTTTTTAGCCATCCTTGTCGTTATCTCCGGTGTTTCTCTCAAA 600
Query 601 CGACCCTAA 609
|||||||||
Sbjct 601 CGACCCTAA 609
> AT3G11550.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr3:3638195-3639197 FORWARD LENGTH=827
Length=827
Score = 475 bits (257), Expect = 2e-133
Identities = 493/604 (82%), Gaps = 28/604 (5%)
Strand=Plus/Plus
Query 23 TTGATGTCCCTGCAGAGTCTAGCTCAGCCATCAAAGGCAAAGCTCCTCTCCTTGGTTTAG 82
|||||||||||||||| || ||||||||||| ||||||||||||||||| | ||| |||
Sbjct 90 TTGATGTCCCTGCAGAATCCAGCTCAGCCATGAAAGGCAAAGCTCCTCTAATCGGTGTAG 149
Query 83 CCAGAGA-C-CAC-AC--G-GGCTCAGGGGGTTACAAGAGAGGTCTTTCCAT-TTTCGAT 135
| ||||| | ||| || | |||||||| || ||||| ||||| || |||| ||| ||
Sbjct 150 CAAGAGACCACACTACTAGTGGCTCAGGTGGATACAACAGAGGACTCGCCATCTTT-GAC 208
Query 136 TTCCTTCTCCGTTTAGCCGCCATTGTAGCTGCCTTAGCTGCTGCTGCCACAATGGGGACT 195
||||| ||||||||||| |||||||| || || ||||||||||| ||||| ||||| ||
Sbjct 209 TTCCTCCTCCGTTTAGCTGCCATTGTTGCAGCTTTAGCTGCTGCCGCCACGATGGGAACA 268
Query 196 AGTGACGAGACTC-TCCCTTTCTTCACTCAGTTTTTACAGTTCGAAGCTAGCTACGACGA 254
|| |||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 269 AGCGACGAGACTCTTCCC-TTCTTCACACAGTTCTTACAGTTCGAAGCTAGCTACGACGA 327
Query 255 TCTTCCAACTTTCCAGTTCTTTGTGGTTGCCATTGCAATAGTCGCAGGTTACCTTGTCCT 314
||| ||||||||||||||||||||| ||||||| || | || | ||| || || || ||
Sbjct 328 TCTACCAACTTTCCAGTTCTTTGTGATTGCCATGGCCCTTGTAGGAGGATATCTCGTTCT 387
Query 315 GTCTCTTCCCTTCTCAGTCGTCACGATTGTTCGTCCTCTAGCCGTTGCTCCGAGGCTCCT 374
||||||||| |||| |||||||| || |||| ||||| ||| || || || |||||
Sbjct 388 GTCTCTTCCAATCTCCGTCGTCACAATCCTTCGCCCTCTCGCCACCGCCCCAAGACTCCT 447
Query 375 CTTGCTTGTTCTTGACACTGCGGCTC-TGGC-TCTGGACACTGCGGCTGCTTC-TGCGGC 431
|||||| ||||||||||||| || || |||| | || |||| |||||||| || | ||||
Sbjct 448 CTTGCTCGTTCTTGACACTGGGG-TCCTGGCGT-TGAACACGGCGGCTGCATCAT-CGGC 504
Query 432 AGCGGCTATAGTG-TATTTGGCACACAATGGGAAT-ACGAACACAAACTGGCTTCCAATC 489
|| || ||| | ||| | ||||||| ||| || | |||||| |||||||| || ||
Sbjct 505 GGCAGCAATA-TCATATCTAGCACACAGTGGTAACCA-GAACACGAACTGGCTCCCCATT 562
Query 490 TGCCAACAGTTTGGAGATTTCTGTCAGAAAA-CGAGCGGAGCTGTCGTCTCTGCCTTTGC 548
||||||||||||||||| |||||||| |||| | ||||||||||| |||||||||||||
Sbjct 563 TGCCAACAGTTTGGAGACTTCTGTCA-AAAATCCAGCGGAGCTGTTGTCTCTGCCTTTGT 621
Query 549 CTCTGTCACGT-TT-TT-AGCCATCCTTGTCGTCATCTCCGGTGTCTCTCTCAAACGACC 605
||| ||| || || || | ||||||| || ||||||||||| ||| |||| ||| |||
Sbjct 622 CTCCGTC--GTATTCTTCA-CCATCCTCGTTGTCATCTCCGGCGTCGCTCTGAAAAGACA 678
Query 606 CTAA 609
||||
Sbjct 679 CTAA 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5