BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892570
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06430.1 | Symbols: | Thioredoxin superfamily protein | chr... 878 0.0
> AT5G06430.1 | Symbols: | Thioredoxin superfamily protein | chr5:1963072-1964314
REVERSE LENGTH=1156
Length=1156
Score = 878 bits (475), Expect = 0.0
Identities = 538/568 (95%), Gaps = 5/568 (1%)
Strand=Plus/Plus
Query 16 ACTACGAGCGCGTCTGA-TTCAAAAGATCCATTCTTTTGCTTGAAATGGCCATGGGATTC 74
||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 ACTACGAGCTCTTCT-ACTTCAAAAGATCCATTCTTTTGCTTGAAATGGCCATGGGATTC 140
Query 75 TAACAAACAACCCAAA---TCTTCAAGCGTCTGCGACTTTCAAGGTCCGTGGCTCTTCAG 131
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 141 AAACAAACAACCCAAATCCTCTTCAAGCGTCTGCGACTTTCAAGGACCGTGGCTCTTCAG 200
Query 132 ATCTATGCAAACTATTGGTTCAATTGCTCTCAGCTCCTTGACTTCATTTGGTCAAAACCC 191
|||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 201 ATCTATGCAAACTATTGGCTCCATTGCTCTCAGCTCTTTGACTTCATTTGGCCAAAACCC 260
Query 192 CAATTTTAGACCAAAGAAGAAGCCTTTAAGTAGTTGTGAGCAAGGAGAAGCAGAGCAGAT 251
|||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 261 CAATTTCAGACCAAAGAAGAAGCCTTTAAGCAGTAGTGAGCAAGGAGAAGCAGAGCAGAG 320
Query 252 GGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACAGTGCTTCAATTTTACTCACC 311
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 321 GGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACGGTTCTTGAATTTTACTCACA 380
Query 312 CAAATGCAGACTCTGCAATTCTTTGCTCAACTTTGTTTTAGAAATAGAGAAAAGGAATTC 371
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 381 CAAATGCAGACTCTGCAATTCTTTGCTCAAATTTGTTTTAGAGGTAGAGAAAAGGAATTC 440
Query 372 CAATTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAAATGGTTTCCTGAGCTTCT 431
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 AAATTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAAATGGTTTCCTGAGCTTCT 500
Query 432 CCACTATGACATAAAGTATGTTCCTTGCTTCGTTTTGTTGGACAAAAATGGACAAGCTTT 491
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CCACTATGACGTAAAGTATGTTCCTTGCTTCGTTTTGTTGGACAAAAATGGACAAGCTTT 560
Query 492 AGCCAAGACAGGAGTTCCAAGTAGTCGTGCTCATGTCATTGCCGGTATCTCTCATCTTCT 551
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 561 GGCCAAGACAGGAGTTCCAAGTAGTCGTGCTCATGTCATCGCCGGTATCTCTCATCTTCT 620
Query 552 CAAGATGAAGCGACCACCCTCTGAGTAG 579
|||||||||||||||||| ||| |||||
Sbjct 621 CAAGATGAAGCGACCACCATCTAAGTAG 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5