BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892570 Length=579 Score E Sequences producing significant alignments: (Bits) Value AT5G06430.1 | Symbols: | Thioredoxin superfamily protein | chr... 878 0.0 > AT5G06430.1 | Symbols: | Thioredoxin superfamily protein | chr5:1963072-1964314 REVERSE LENGTH=1156 Length=1156 Score = 878 bits (475), Expect = 0.0 Identities = 538/568 (95%), Gaps = 5/568 (1%) Strand=Plus/Plus Query 16 ACTACGAGCGCGTCTGA-TTCAAAAGATCCATTCTTTTGCTTGAAATGGCCATGGGATTC 74 ||||||||| | ||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 82 ACTACGAGCTCTTCT-ACTTCAAAAGATCCATTCTTTTGCTTGAAATGGCCATGGGATTC 140 Query 75 TAACAAACAACCCAAA---TCTTCAAGCGTCTGCGACTTTCAAGGTCCGTGGCTCTTCAG 131 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 141 AAACAAACAACCCAAATCCTCTTCAAGCGTCTGCGACTTTCAAGGACCGTGGCTCTTCAG 200 Query 132 ATCTATGCAAACTATTGGTTCAATTGCTCTCAGCTCCTTGACTTCATTTGGTCAAAACCC 191 |||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| Sbjct 201 ATCTATGCAAACTATTGGCTCCATTGCTCTCAGCTCTTTGACTTCATTTGGCCAAAACCC 260 Query 192 CAATTTTAGACCAAAGAAGAAGCCTTTAAGTAGTTGTGAGCAAGGAGAAGCAGAGCAGAT 251 |||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 261 CAATTTCAGACCAAAGAAGAAGCCTTTAAGCAGTAGTGAGCAAGGAGAAGCAGAGCAGAG 320 Query 252 GGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACAGTGCTTCAATTTTACTCACC 311 ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 321 GGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACGGTTCTTGAATTTTACTCACA 380 Query 312 CAAATGCAGACTCTGCAATTCTTTGCTCAACTTTGTTTTAGAAATAGAGAAAAGGAATTC 371 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 381 CAAATGCAGACTCTGCAATTCTTTGCTCAAATTTGTTTTAGAGGTAGAGAAAAGGAATTC 440 Query 372 CAATTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAAATGGTTTCCTGAGCTTCT 431 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 AAATTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAAATGGTTTCCTGAGCTTCT 500 Query 432 CCACTATGACATAAAGTATGTTCCTTGCTTCGTTTTGTTGGACAAAAATGGACAAGCTTT 491 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 501 CCACTATGACGTAAAGTATGTTCCTTGCTTCGTTTTGTTGGACAAAAATGGACAAGCTTT 560 Query 492 AGCCAAGACAGGAGTTCCAAGTAGTCGTGCTCATGTCATTGCCGGTATCTCTCATCTTCT 551 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 561 GGCCAAGACAGGAGTTCCAAGTAGTCGTGCTCATGTCATCGCCGGTATCTCTCATCTTCT 620 Query 552 CAAGATGAAGCGACCACCCTCTGAGTAG 579 |||||||||||||||||| ||| ||||| Sbjct 621 CAAGATGAAGCGACCACCATCTAAGTAG 648 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829717438 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5