BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892601
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06740.1 | Symbols: | Concanavalin A-like lectin protein ki... 3053 0.0
> AT5G06740.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:2084094-2086052 FORWARD LENGTH=1959
Length=1959
Score = 3053 bits (1653), Expect = 0.0
Identities = 1865/1968 (95%), Gaps = 12/1968 (1%)
Strand=Plus/Plus
Query 1 ATGAGATTTTCTCTTGCGTGGAAGCTCCTGTTCTTGATTCTAACTATAGCTTGTAAGCTC 60
||||||||||||||||||||||||||||||||||||| | |||| | |||||||| ||
Sbjct 1 ATGAGATTTTCTCTTGCGTGGAAGCTCCTGTTCTTGA---T-ACTA-A-CTTGTAAGATC 54
Query 61 GAGACACAAGTGAAGTGCTTAGAGTTCAATTTCCCTGGGTTTAATGTGAGCAATGATCTG 120
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 55 GAGACACAAGTGAAGTGCTTAAAGTTCGATTTCCCTGGGTTTAATGTGAGCAATGAACTG 114
Query 121 GACTTGATCCGAGACAACTCATACATTGTCCTTGGAGCAATCCAAGTGACTCCTGATGTT 180
|| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 115 GAATTGATCCGAGATAACTCATACATTGTCTTTGGAGCAATCCAAGTGACTCCTGATGTT 174
Query 181 AGTGGTGGGCCTGGTGGCTCTATCGCCAACCAAGCGGGCAGAGCTCTATACAATAAGCCT 240
| |||||| ||||||||| ||||||| |||||||| |||||||| || ||||| ||||||
Sbjct 175 ACTGGTGGACCTGGTGGCACTATCGCAAACCAAGCAGGCAGAGCACTCTACAAAAAGCCT 234
Query 241 TTCAGGCTATGGAGCAAAGACAAGAATGCTACTTTCAACACCACTTTCGTTATTAACATC 300
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 235 TTCAGGCTATGGAGCAAACACAAGAGTGCTACTTTCAACACCACTTTCGTTATTAACATC 294
Query 301 TCGAACAAAACCGATCCCGGAGGCGAAGGCTTAGCTTTCGTTCTCACACCCGAGAAGACC 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 295 TCTAACAAAACCGATCCCGGAGGCGAAGGCTTAGCTTTCGTTCTCACACCCGAGGAGACT 354
Query 361 GCTCCTCAGAACAGCTCAGGTATGTGGCTCGGTCTGGTCAATGAAAGGACAAACATGACT 420
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| | || |
Sbjct 355 GCTCCTCAGAACAGCTCAGGTATGTGGCTCGGTATGGTCAACGAAAGAACAAATAGGAAT 414
Query 421 -CTCGAGTCGAGGATCGTTTCTGTTGAGTTCGACACAAGGAAGAGCCATCCGGATGATAT 479
| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |
Sbjct 415 AAT-GAGTCGAGGATCGTTTCGGTTGAGTTCGACACAAGGAAGAGTCATTCGGATGATCT 473
Query 480 TGATGGAAACCATGTGGCTCTAAATGTGAACAACATCAATTCTGTTGTTCAAGAATCCTT 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 474 TGATGGAAACCATGTGGCTCTAAATGTGAACAACATCAATTCGGTTGTTCAAGAATCCTT 533
Query 540 GAGTGGTCGAGGGATCAAGATCGATTCCGGAGTTGACTTAACCGCTCATGTGCGGTATGA 599
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 534 GAGCGGTCGAGGGATCAAGATCGATTCCGGACTTGACTTAACCGCACATGTGCGGTATGA 593
Query 600 TGGTAAGAATCTATCGGTTTATGTCTCTAGAAACTTGGAGGTGTTTGAACAGAGGAACTT 659
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 594 TGGTAAGAATCTATCGGTTTATGTCTCAAGAAACTTGGATGTGTTTGAACAGAGGAACTT 653
Query 660 AGTGTTTTCTAGGGCTATAGATCTCTCAGCCTATCTTCCGGAGACAGTTTATGTTGGATT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AGTGTTTTCTAGGGCTATAGATCTCTCAGCCTATCTTCCGGAGACAGTTTATGTTGGATT 713
Query 720 TACCGCTTCAACAAGCAATTTCACGGAGCTGAATTGTGTGAGATCATGGAGGTTTGAAGG 779
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 714 TACAGCTTCAACAAGCAATTTCACGGAGCTGAATTGTGTGAGATCATGGAGTTTTGAAGG 773
Query 780 TTCAGAGATCGATGGCGATGGAAACATGTTATGGCTCTGGATCACTATCCCTATAGTGTT 839
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTTAAAGATCGATGGCGATGGAAACATGTTATGGCTCTGGATCACTATCCCTATAGTGTT 833
Query 840 TCTTGTT-GTAATAGGAGCTTTCTTAGGGGCATTGTACTTGAGATCTAGGTCAAAGGCAG 898
| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 834 TATTGTTGGT-ATAGGAGCTTTCTTAGGAGCATTGTACTTGAGATCTAGGTCAAAGGCAG 892
Query 899 GGGAAACAAATCCGGATATAGAAGCTGAGCTAGATAATTGCGCTGCAAACCCGCAGAAGT 958
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 893 GGGAAACAAATCCGGATATAGAAGCTGAGCTAGATAATTGCGCTGCAAATCCGCAGAAGT 952
Query 959 TCAAGCTGAGAGAGCTGAAGAGAGCAACAGGGAACTTCGGCGTGGAGAACAAACTCGGGC 1018
|||||||||||||||| |||||||||||||| |||||||||| |||||| ||||| ||||
Sbjct 953 TCAAGCTGAGAGAGCTAAAGAGAGCAACAGGAAACTTCGGCGCGGAGAATAAACTAGGGC 1012
Query 1019 AAGGCGGGTTTGGGATGGTGTTTAAGGGGAAATGGCAGGGTAGAGACATAGCTGTGAAAC 1078
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1013 AAGGCGGGTTTGGGATGGTGTTTAAAGGGAAATGGCAGGGTAGAGACATAGCTGTGAAAC 1072
Query 1079 GAGTTTCCGAGAAATCGCATCAAGGGAAGCAAGAGTTTATAGCCGAGATCACAACGATCG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1073 GAGTTTCCGAGAAATCGCATCAAGGGAAGCAAGAGTTTATAGCCGAGATCACAACTATTG 1132
Query 1139 GTAATCTGAATCATAGGAACCTGGTTAAATTATTGGGATGGTGCTACGAGAGAAAGGAGT 1198
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1133 GTAATCTGAATCATAGGAACCTGGTGAAGTTATTGGGATGGTGCTACGAGAGGAAGGAGT 1192
Query 1199 ATCTTCTGGTTTATGAGTATATGCCTAACGGAAGCTTGGACAAATATCTTTTCTTGGAAG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATCTTCTGGTTTATGAGTATATGCCTAACGGAAGCTTGGACAAATATCTTTTCTTGGAAG 1252
Query 1259 ATAAGTCAAGATCAAACCTAACATGGGAGACAAGGAAGAACATCATAACAGGGCTATCTC 1318
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1253 ACAAGTCAAGATCAAACCTAACATGGGAGACAAGGAAGAACATTATAACAGGGCTATCTC 1312
Query 1319 AAGCTTTGGAGTATCTTCACAATGGATGTGAGAAGAGGATACTTCACAGAGACATAAAGG 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1313 AAGCTTTGGAGTATCTTCACAATGGATGTGAGAAGAGGATACTTCACAGAGACATAAAAG 1372
Query 1379 CAAGCAACGTAATGCTAGACTCGGATTTCAACGCCAAGCTCGGCGATTTCGGGCTTGCGA 1438
|||||||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 1373 CAAGCAACGTAATGCTGGACTCCGACTTCAACGCAAAGCTCGGCGACTTCGGGCTTGCGA 1432
Query 1439 GGATGATTCAGCAAAGCGAAATGACACACCATTCAACCAAGGAGATCGCTGGGACACCTG 1498
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |
Sbjct 1433 GGATGATTCAGCAAAGCGAAATGACACATCATTCGACCAAGGAGATCGCTGGAACACC-G 1491
Query 1499 GG-TACATGGCTCCGGAGACTTTTCTCAACGGGAGAGCCACAGTTGAAACAGATGTGTAT 1557
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GGATACATGGCTCCTGAGACTTTTCTCAACGGGAGAGCCACAGTTGAAACAGATGTGTAT 1551
Query 1558 GCGTTTGGAGTTCTAATGCTCGAAGTAGTCTCAGGGAAGAAACCTTGCTATGTCTTGGTC 1617
||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1552 GCGTTCGGAGTTCTAATGCTTGAAGTAGTCTCGGGGAAGAAACCAAGCTATGTCTTGGTC 1611
Query 1618 AAGGAGAACCAGAGCAATTACAACAATAGCATTGTGAATTGGCTATGGGAGCTATACAGA 1677
|| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 AAAGACAACCAGAACAATTACAACAATAGCATTGTGAATTGGCTATGGGAGCTATACAGA 1671
Query 1678 AATGAAACCATCATGGATGCAGCGGATCCGGGAATGGGAAGTTTGTTCGATAAAGAAGAA 1737
|||| |||||||| |||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 1672 AATGGAACCATCACGGATGCTGCCGATCCGGGAATGGGAAATTTGTTCGATAAAGAAGAA 1731
Query 1738 ATGAAAAGTGTTTTGCTCTTAGGACTCGCTTGCTGCCACCCGAATCCGAACCAAAGACCC 1797
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1732 ATGAAAAGCGTTTTGCTCTTAGGACTAGCTTGCTGCCACCCGAATCCGAACCAAAGACCG 1791
Query 1798 TCCATGAAAACGGTTTTGAAGGTCTTGACGGGTGAGACTAGCCCACCCGATGTTCCTACA 1857
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1792 TCCATGAAAACAGTGTTGAAGGTCTTGACGGGTGAGACTAGCCCACCGGATGTTCCTACA 1851
Query 1858 GAGAGACCGGCTTTCGTGTGGCCAGCAATGCCTCCATCTTTCAGTGACATTGACTACTCT 1917
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1852 GAGAGACCAGCTTTCGTGTGGCCAGCGATGCCTCCATCTTTCAGTGACATTGACTACTCT 1911
Query 1918 CTTACAGGGAGTCAGATCAATTCCCTTACCGAGCTTACTGGCCGATGA 1965
||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 1912 CTTACAGGGAGTCAGATCAATTCACTTACGGAGCTTACTGGCAGATGA 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97338856755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5