BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892614
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06430.1 | Symbols: | Thioredoxin superfamily protein | chr... 841 0.0
> AT5G06430.1 | Symbols: | Thioredoxin superfamily protein | chr5:1963072-1964314
REVERSE LENGTH=1156
Length=1156
Score = 841 bits (455), Expect = 0.0
Identities = 537/576 (93%), Gaps = 8/576 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCAAA-G--A-TGACTACGAGCGCGTCTACTTCAAAAGATCCATTCTTTTGCTT 56
||||||||||| | | | ||||||||| | |||||||||||||||||||||||||||||
Sbjct 64 ATGGAATCAAAGGTTACT-ACTACGAGCTCTTCTACTTCAAAAGATCCATTCTTTTGCTT 122
Query 57 GAAATGGCCTTGGGATTCTAACAAACATCCCAAA---TCTTCAAGCGTCTGCGACTTTCA 113
||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 123 GAAATGGCCATGGGATTCAAACAAACAACCCAAATCCTCTTCAAGCGTCTGCGACTTTCA 182
Query 114 AGGACCGTGGCTCTTCAGATCTATGCAAACTGTTGGTTCAATTGCTCTCAGCTCCTTGAC 173
||||||||||||||||||||||||||||||| |||| || |||||||||||||| |||||
Sbjct 183 AGGACCGTGGCTCTTCAGATCTATGCAAACTATTGGCTCCATTGCTCTCAGCTCTTTGAC 242
Query 174 TTCATTTGGTCAAAACTCCAATTTTAGACCAAAGAAGAAACCTTTAAGTAGTTGTGAGCA 233
||||||||| |||||| ||||||| |||||||||||||| |||||||| ||| |||||||
Sbjct 243 TTCATTTGGCCAAAACCCCAATTTCAGACCAAAGAAGAAGCCTTTAAGCAGTAGTGAGCA 302
Query 234 AGGAGAAGCAGAGCAGATGGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACAGT 293
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 303 AGGAGAAGCAGAGCAGAGGGCTTTTGCAGCTGCTTTAGCTAGCCAGAAAGAAGCTACGGT 362
Query 294 GCTTCAATTTTACTCACCCAAATGCAGACTCTGCAATTCGTTGCTCAACTTTGTTTTAGA 353
||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct 363 TCTTGAATTTTACTCACACAAATGCAGACTCTGCAATTCTTTGCTCAAATTTGTTTTAGA 422
Query 354 GGTAGAGAAGAGGAATTCGAACTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAA 413
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGTAGAGAAAAGGAATTCAAATTGGCTCAGCATTACAATGGCAGACGCAGAGAATGAGAA 482
Query 414 ATGGTTTCCTGAGCTTCTCCACTATGACATAAAGTATGTTCCTTGCTTCGTTTTGTTGGA 473
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 483 ATGGTTTCCTGAGCTTCTCCACTATGACGTAAAGTATGTTCCTTGCTTCGTTTTGTTGGA 542
Query 474 CAAAAATGGACAAGCTTTGGCCAAAACAGGAGTTCCAACTAGTCGTGCTCACGTCATTGC 533
|||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||
Sbjct 543 CAAAAATGGACAAGCTTTGGCCAAGACAGGAGTTCCAAGTAGTCGTGCTCATGTCATCGC 602
Query 534 CGGTATCTCTCATCTTCTCAAGATGAAGCGCCCACC 569
|||||||||||||||||||||||||||||| |||||
Sbjct 603 CGGTATCTCTCATCTTCTCAAGATGAAGCGACCACC 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5