BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892618
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06905.1 | Symbols: CYP712A2 | cytochrome P450, family 712, ... 2460 0.0
AT2G42247.1 | Symbols: | other RNA | chr2:17599370-17601825 FO... 76.8 6e-13
AT2G42250.1 | Symbols: CYP712A1 | cytochrome P450, family 712, ... 76.8 6e-13
> AT5G06905.1 | Symbols: CYP712A2 | cytochrome P450, family 712,
subfamily A, polypeptide 2 | chr5:2138438-2140078 REVERSE
LENGTH=1566
Length=1566
Score = 2460 bits (1332), Expect = 0.0
Identities = 1489/1567 (95%), Gaps = 2/1567 (0%)
Strand=Plus/Plus
Query 13 ATGAATTACACATCTTGTTCCTATCTCTTCTTCACATTTATTACCATCTTCCTTCTTCAT 72
|||||||| || |||||||| ||||||||||||||| || | |||||||||||||| |||
Sbjct 1 ATGAATTATACTTCTTGTTCATATCTCTTCTTCACACTTGTAACCATCTTCCTTCTCCAT 60
Query 73 AGACTCTTCAGCTCCTCAAGCCGCAGCGGTCTTCCTCCAGGTCCCCTAGGACTTCCCATT 132
||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||| ||
Sbjct 61 AGACTCTTCAGCTCCTCTAGCCGCAGAGGTCTTCCTCCAGGTCCTCGAGGACTTCCCGTT 120
Query 133 CTCGGTCATATGCATCTCCTCCGGTCTAGCCTCCCTCGTTCTCTTCAATCCTTGGCTCAC 192
|| ||||||||||||||||||||||||||||| || || ||||||||| ||||||||||
Sbjct 121 CTTGGTCATATGCATCTCCTCCGGTCTAGCCTACCACGATCTCTTCAAGCCTTGGCTCAT 180
Query 193 ACTTACGGTCCTCTCATGACCATACGCATCGGATCACTAC-ATGTCCTCGTTGTCTCAGA 251
|||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||
Sbjct 181 ACTTACGGTCCTCTCATGACCATACGCATCGGATCATTACGA-GTCCTCGTTGTCTCAGA 239
Query 252 TTCCGACACAGCTAAGCAAATCCTCAAGACTCACGACCCTGATTTCGCTTCCAAGTTTGT 311
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCCGACACAGCTAAGCTAATCCTCAAGACTCACGACCCTGATTTCGCTTCCAAGTTTGT 299
Query 312 GTTTGGTCCGAGACAGTTCAATGTTTATAAAGGAGCAGAGTTCTTTAATGCACCTTATGG 371
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 GTTTGGTCCGAGACAGTTCAATGTTTATAAAGGATCAGAGTTCTTTAATGCACCTTATGG 359
Query 372 ACCTTACTGGAGGTTCATGAAGAAGCTGTGCATGACTAAGCTATTCGCAGGTTATCAGCT 431
| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 360 ATCTTACTGGAGGTTCATGAAGAAGCTATGCATGACTAAGCTATTCGCGGGTTATCAGCT 419
Query 432 TGATCGATTTGTCGATATAAGAGAAGAGGAAACGTTAGCTTTACTGACCTCGCTCGTTGA 491
||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 420 TGATCGATTTGTCGACATAAGAGAAGAGGAAACGTTAGCTTTACTGAGCACGCTGGTTGA 479
Query 492 GAGATCGAGTAATGGAGAGGCGTGCGATCTCGGTTTGGAGTTCACCGCTTTGACCACGAA 551
||| ||| | || |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 480 GAGGTCGCGAAACGGAGAGGCTTGCGATCTCGGTTTGGAGTTCACTGCTTTGACCACAAA 539
Query 552 GATCTTATCAAAGATGGTTATGGGGAAAAGGTGCCGCCAAAACTCGGATATTCCCGTAGA 611
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 540 GATCTTATCAAAGATGGTTATGGGGAAAAGGTGCCGCCAAAACTCGAATATTCCCAAAGA 599
Query 612 GATAAGGAAGATAGTGAGCGATATTATGGCTTGCGCCACAAGGTTTGGATTCATGGAGCT 671
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATCAGGAAGATAGTGAGTGATATTATGGCTTGCGCCACAAGGTTTGGATTCATGGAGCT 659
Query 672 ATTTGGACCATTGCGGGATCTGGATTTGTTTGGTAATGGCAAGAAGCTTAGATCCTCCAT 731
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 660 ATTTGGACCATTGCGGGATCTGGATTTGTTTGGGAATGGTAAGAAGCTTAGATCCTCTAT 719
Query 732 TTGGCAGTACGATGAGTTGGTTGAGAAGATACTGAAGGAATATGAAAACGATAAGACCAA 791
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 TTGGCGGTATGATGAGTTGGTTGAGAAGATACTGAAGGAATATGAAAACGATAAGAGCAA 779
Query 792 TGAAGAAGAAGAGAAAGATAAAGATATCGTCGATATCTTGTTGGACACGTATAATGACCC 851
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGAGGAAGAAGAGAAAGATAAAGATATCGTCGATATCTTGTTGGACACGTATAATGACCC 839
Query 852 AAAAGCCGAACTCAAATTGACGATGAATCAGATCAAGTTCTTCATCCTTGAGTTGTTCAT 911
|||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 840 AAAAGCCGAACTCAGATTGACTATGAATCAGATCAAGTTCTTCATTCTTGAGTTGTTCAT 899
Query 912 GGCCAGCTTAGATACAACTTCTGCAGCTTTACAGTGGACAATGACAGAGCTAATCAACCA 971
||| |||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 900 GGCGAGCTTAGACACGACTTCTGCAGCTTTACAATGGACAATGACTGAGCTAATCAACCA 959
Query 972 TCAGGATATCTTCGCGAAGATCAGAGACGAGATCAAATCGGTTGTAGGAACATCGAATCG 1031
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 960 TCCGGATATCTTCGCGAAGATCAGAGACGAGATCAAATCGGTTGTAGGAACAACGAACCG 1019
Query 1032 TTTAATCAAAGAATTAGACTTGCAGAAGCTTCCTTACCTACAAGCAGCTATCAAGGAGAC 1091
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTTAATCAAAGAATCAGATTTGCAGAAGCTTCCTTACCTACAAGCAGCTATCAAGGAGAC 1079
Query 1092 ATTGAGACTTCATCCAGTAGGACCATTACTACGCAGAGAAAGCAACACAGACATGAAGAT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATTGAGACTTCATCCAGTAGGACCATTACTACGCAGAGAAAGCAACACAGACATGAAGAT 1139
Query 1152 CAACGGGTACGATGTAAAATCCGGTACAAAGATCTTCATCAATGCTTACGGGATAATGCG 1211
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 CAACGGGTACGATGTAAAATCCGGGACAAAGATCTTCATCAATGCTTACGGGATAATGCG 1199
Query 1212 CGATCCGACCACATACAAAGACCCTGACAAGTTTATACCTGAGAGGTTTCTTGTGGTGGA 1271
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1200 TGATCCGACCACATACAAAGACCCTGACAAGTTTATGCCAGAGAGGTTTCTTGTGGTGGA 1259
Query 1272 ACAAGATACAGAGAGAAAGATGGGTTATTACCAGCAATATATGTTGGAATTAAAAGGTCA 1331
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1260 ACAAGATACAGAGAGAAAGATGGGTTACTACCAGCAATATATGTTGGAATTAAAAGGCCA 1319
Query 1332 AGATGTGAATTATCTTGCGTTCGGGAGCGGAAGGCGAGGATGTCTTGGAGCTTCTCACGC 1391
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1320 AGATGTGAATTATCTTGCGTTTGGGAGCGGAAGACGAGGATGTCTTGGAGCTTCTCACGC 1379
Query 1392 TTCTCTTGTGTTGAGTCTCACAATCGGATCACTCGTGCAGTGTTTTAACTGGACGGTGAA 1451
|||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1380 TTCTCTGGTGTTGAGTCTCACAATTGGGTCACTCGTGCAGTGTTTTAATTGGACGGTGAA 1439
Query 1452 GGGAGATGAAGACAAAATCAAGATCAAGTTACCTACCGGCTTTTCGGCTTCAGGGACTGC 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGGAGATGAAGACAAAATCAAGATCAAGTTACCTACCGGCTTTTCGGCTTCAGGGACTGC 1499
Query 1512 TGGGGGAAGCTCACTTATGTGTTCTCCTGAATTATGTTTTGATCCGTTTGGATACAAAAC 1571
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1500 TGGAGGAAGCTCACTTATGTGTTCTCCTGAATTATGTTTTGATCCATTTGGATACCAAAC 1559
Query 1572 TAAGTGA 1578
|||||||
Sbjct 1560 TAAGTGA 1566
> AT2G42247.1 | Symbols: | other RNA | chr2:17599370-17601825
FORWARD LENGTH=1558
Length=1558
Score = 76.8 bits (41), Expect = 6e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 367 TATGGACCTTACTGGAGGTTCATGAAGAAGCTGTGCATGACTAAGCT 413
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TATGGAGATTACTGGAGGTTCATGAAGAAGCTGTGCATGACTAAGCT 1012
> AT2G42250.1 | Symbols: CYP712A1 | cytochrome P450, family 712,
subfamily A, polypeptide 1 | chr2:17600075-17601849 REVERSE
LENGTH=1685
Length=1685
Score = 76.8 bits (41), Expect = 6e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 367 TATGGACCTTACTGGAGGTTCATGAAGAAGCTGTGCATGACTAAGCT 413
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 525 TATGGAGATTACTGGAGGTTCATGAAGAAGCTGTGCATGACTAAGCT 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5