BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892670
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07380.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2937 0.0
> AT5G07380.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: egg
cell; Has 84 Blast hits to 81 proteins in 31 species: Archae
- 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 41;
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2332527-2336061
FORWARD LENGTH=2153
Length=2153
Score = 2937 bits (1590), Expect = 0.0
Identities = 1832/1947 (94%), Gaps = 24/1947 (1%)
Strand=Plus/Plus
Query 1 ATGGTGCTACTATGTTTCGTCTTGGATCTGCGGAATATCTCGCCTTCGCTGATTGGAGAT 60
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGGTGCTACTTTGTTTCGTCGTGGATCTGCGGAATATCTCGCCTTCTCTGATCGGAGAT 60
Query 61 CTCAAGCAGTCGTTTCTGAAACTCGGCAATTTACACGCAATTTCGTCTCCGGTAGATTCT 120
|| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 61 CTAAAGCAGTCGTTTCTGAAGCTCAGCAACTTACACGCAATTTCGTCTCCGGTAGATTCT 120
Query 121 CTCACTGATCGGATCGGTTTGTGTTATATCTCGAAAGATCGGATTTCTGGAAACGATCAG 180
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 121 CTCACTGATCGGATCGGTTTGTGTTATATCTTGAAAGATCGAATTTCTGGAAACGATCAG 180
Query 181 CAGTTGAAATTTGCCTACACTCCTACTGGAAACTTCTGTCTTCGAGACTTCCATCACGCT 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGTTGAAATTTGCGTACACTCCTACTGGAAACTTCTGTCTTCGAGACTTCCATCACGCT 240
Query 241 ATGAACAGCTTGCCTTTGGATTCGTTTGTACCTGAGATCGATGAATCGGGAGCCATATCT 300
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTAACAGCTTGCCTTTGGATGCGTTTGTACCTGAGATCGATGAATCGGGAGCCATATCT 300
Query 301 TGCAGAGATCTTAAGCTATCAAGTGTTCTGTGTGATCGAGCTTTGTACTCGTGGGGAGGT 360
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 301 TGCAGAGATCTAAAGCTATCAAGTGTTCTATGTGATCGAGCTTTGTACTCATGGGGAGGT 360
Query 361 AGAGACATTATGAGGAAAGTTATTGTGCTGAGTTCTTGCTTCCCTGAAGATATGGATTCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGACATTATGAGGAAAGTTATTGTGCTGAGTTCTTGCTTCCCTGAAGATATGGATTCT 420
Query 421 GAAGCTAGAAACACTCTTATGGCTGCAGCAGATAAATGTGTGTCAGTTGAGTTTCTTTTG 480
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GAAGCTAAAAACACTCTTATGGCTGCAACAGATAAATGTGTGTCAGTTGAGTTTCTTTTG 480
Query 481 TTTGAGAAGCAAGGAAGCTATGTGAGCTATACGCAGGAGAAGATTAATAGATTCCTCAGA 540
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGAGAAGCAAGAAAGCTATCTGAGCTATACGCAGGAGAAGATTAATAGATTCCTCAGA 540
Query 541 TGCTTATCGGATCTTGACAATTGTTCATTTCAAACCTGTATCCCTGATGAAAAATCACTT 600
|| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 541 TGTTTATCGGATCTTGACAATTGTTCATTTCAAACCTGCATCCCTGATGGAAAATCACTT 600
Query 601 CATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGAGAATCACTGCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATGGCCTTGAAAAGAGATGGCTTCAGGAGCTAAAGGATGACACTGGAGAATCACTGCAG 660
Query 661 GCTCAGATTATCTTCAAAAGTAACATAGTTGGTTCAGTGAACAAAATCTTCTGCAATCTC 720
|||||||||||||||||||||||| | ||||||||||| || || ||||||||||| ||
Sbjct 661 GCTCAGATTATCTTCAAAAGTAACCTTGTTGGTTCAGTAAATAAGGTCTTCTGCAATATC 720
Query 721 ACCGCAGCCACAAATCAGATTGTTGACGGATTTAGCCCTTGTCGAACATGCAGGTGCCAT 780
|| |||||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct 721 ACTGCAGCCACAAATCAGATTGTCGACGGATTTATCCCTTGTCAAACATGCAGGTGCCAC 780
Query 781 GG-ATTCCCATTACTAGATTCTGTGAAAAA-C-ACCATGGAGAA-TCTGAAATGCTCCAT 836
|| || |||||||| |||||| ||| |||| | | || | |||| | ||||||||||| |
Sbjct 781 GGCAT-CCCATTACAAGATTCAGTGGAAAAGCCAACA-G-AGAAGT-TGAAATGCTCCGT 836
Query 837 AACCAACCATGAACTTGGAAAGTATGATGTGATTGAAAATTCCGTGAAAATTGGCGACAG 896
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 837 AACCAATCATGAACTTGGAAAGTATGATGTGATTGAAAATTCTGTGAAAGTTGGCAACAG 896
Query 897 AACTGTCCTGTTTTTACCTTCAATCCATAGCCTCCAGAAACTTCATCCAATCTCTTCCCA 956
||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 897 AACAACCCTGTTTTTACCTACAATCCATAGCCTCCAGAAACTTCATCCAGTTTCTTCCCA 956
Query 957 AGTTGATTTCCATGTCATAGAGAGGACTAATCTAACTTCTCTCAGTGAAGGCCTACTACT 1016
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 AGTTGATTTCAATGTCATAGAGAGGACTAATCTAACTTCTCTCAGCGAAGGCCTACTACT 1016
Query 1017 TGGGACACCTTACATTGTAAGCCCTTCAACTTGTCATGAAACAGAAGCTTCTTCAGAAGA 1076
||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1017 TGGGATACCTTACATTGTAAGCCCTTCAACTTGTCATGAAACAGAAG-------A-AA-- 1066
Query 1077 AATGGACCAACCAGATTTGAACACTCAGATTTTTCAGGGACTATGTGGTGCACTATATTC 1136
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 --TGGATCAACCAGATTTGAACACTCAGATTTTTCAGGGACTATGTGGTGCACTATATTC 1124
Query 1137 AATGGACCAAGGCTTGGTTTGTTCTTCAAACTGTAATCTAGACACCATGACAGCCGTCGA 1196
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1125 AATGGACCAAGGCTTGGTTTGTTCTTCAAACTGTAATCTAGACACCATGAGAGCCGTGGA 1184
Query 1197 ATTTCATTGTTATTACGTTCTTCAACCGTTTGAAAAGGGTCCAATGCTTCTGAGGAGATT 1256
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1185 ATTTCATTGTTATTACGTTCTTCAACCGTCTGAAAAGGGTCCAATGCTTCTGAGGAGATT 1244
Query 1257 GGCAGGGTCAGAGGAATTCCTTCCTATTTCCAATGTCAGTCAGTTTGCCGAGTCCTCTAT 1316
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1245 GGCAGGGTCAGAGGAAGTCCTGCCTATTTGCAATGTCAGTCAGTTTGCCGAGTCCTCTAT 1304
Query 1317 TCCTAGAGAAATCGAGATTTCTGTCAAAGGCGCTTTGTTAGAGATTGAATCAACGGATTA 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1305 TCCTAGAGAAATCGAGATTTCTGTCAAAGGCGCTTTGTTAGAGATTGAATCAACAAACTA 1364
Query 1377 CAATCCTCTGATCCACAACAG-GGACTTCCACCAGAAACTGAACCTCATTGTGAAAGAAA 1435
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1365 CAATCCTCTGATCCACAACAGAGG-CTTCCACCAGAAACTGAACCTCATTGTGAAAGAAA 1423
Query 1436 GTCTTCAATTTGGTTCATTATATTCCAACACGAAAGACGCAACATATGAAGTGAGCTCAG 1495
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1424 GTCTTCAATTTGGTTCATTACATTCTAACACGAAAGACGCAACATATGAAGTGAGCTCAG 1483
Query 1496 TACTTTCAGATTCTGTAGTTCC-GACGGCACAGACATTTCCAGACATAGTAAATCCAGAA 1554
| | ||||||||||||| |||| | ||| ||||||||||||| ||||||||||||||| |
Sbjct 1484 TCCATTCAGATTCTGTAATTCCAG-CGGAACAGACATTTCCACACATAGTAAATCCAGGA 1542
Query 1555 ATGCTTAAGGAAGTTCATATAATTGATGAAGAAGACAAAGCAACAGCTTCCATTACTAAA 1614
| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 ACACTTCAGGAAGTTCGTATAATTGATGAAGAAGACAAAGCAACAGCTTCCATTACTAAA 1602
Query 1615 GAATGGGAACAACTAGTAGTCACTGAGGAGGTTCTCATGAAGTCTCCTTCTCCGGTTATA 1674
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1603 GAATGGGAACTACTAGTAGTCACTGAGGAGGTTCGCATGAAGTCTCCTTCTCCGGTTATA 1662
Query 1675 ACTACGATCCGCCAAGTTCAATCTCCTATACAGAGTAACAACAAACAGGCTGATATGAAA 1734
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1663 ACTACGATCCGCCAAGTTCTGTCTCCTATACAGAGTAACAACAAACAGGCTGATATGAAA 1722
Query 1735 ACCTCGATGATTTTGGAAAGACTTGAAGCTCCGAGGAAGATAAGAGGAAAAGTTGGATCA 1794
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1723 ACATCAATGATTTTGGAAAGACTTGAAGCTCCGAGGAAGATTAGAGGAAACGTTGGATCA 1782
Query 1795 CCAAGTGTAGTCATACATAGTCCCATCTCACCAGATGTCTGTGTCCTGACTCAAAAGAAG 1854
|||| |||||||||||||| ||||||||||||||||||||||||| | |||| ||||||
Sbjct 1783 CCAAATGTAGTCATACATAATCCCATCTCACCAGATGTCTGTGTCTTTTCTCAGAAGAAG 1842
Query 1855 CCTCTGATTCCTTTTCAGACAACTCAGGTTTCATCAAGCCAGCTCATGAAACCCAGCTTT 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 CCTCTGATTCCTTTTCAGACAACTCAGGTTTCATCAAGCCAGCTCATGAAACCCAGCTTT 1902
Query 1915 CAGAGACTGAAAAGAAAGCCAAAGTGA 1941
|||||||||||| |||||| |||||||
Sbjct 1903 CAGAGACTGAAACGAAAGCAAAAGTGA 1929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96134043675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5