BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892672
Length=3252
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07400.1 | Symbols: | forkhead-associated domain-containing... 4711 0.0
> AT5G07400.1 | Symbols: | forkhead-associated domain-containing
protein / FHA domain-containing protein | chr5:2340642-2345458
FORWARD LENGTH=3564
Length=3564
Score = 4711 bits (2551), Expect = 0.0
Identities = 3044/3278 (93%), Gaps = 49/3278 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAGGCGACACTGCGAGAAAGTTTTGATTCGTATTCACAATTTTGGTACACCATTG 60
|||||||||||||| || ||||||||| |||||||||| |||||| |||| |||||||||
Sbjct 173 ATGAAAAGGCGACAGTGTGAGAAAGTTGTGATTCGTATCCACAATATTGGCACACCATTG 232
Query 61 ATTTCTGGGTCTTCTGGTTTGCCTGTGGA-TTCACTTCACATTGAATCAGATCGGCCGTA 119
|||||||||||||||||||||||| | || || | |||||||| ||||||||||||||||
Sbjct 233 ATTTCTGGGTCTTCTGGTTTGCCTTTAGAGTT-ATTTCACATTCAATCAGATCGGCCGTA 291
Query 120 CACGTTTGGTCGAAGTAGTAGTAATGGGTTTTGTGATTTTGTCT-TTGATCATAGCTCTA 178
|||| ||||||||||||||||| |||||||||| |||||||| | |||||||||||||||
Sbjct 292 CACGATTGGTCGAAGTAGTAGTGATGGGTTTTGCGATTTTGT-TATTGATCATAGCTCTA 350
Query 179 TCAGTAGGAAGCACTGTCAGATTCTATTTGATAGCCAAAGTCACAAACTTTATATTTTTG 238
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TCAGTAGAAAACACTGTCAGATTCTATTTGATAGCCAAAGTCACAAACTTTATATTTTTG 410
Query 239 ATGGCGTGATTGTCTTACCTTCAGTTAGTTTTAGTCAAGTTTATGATGAGTTTAGGAGAA 298
| ||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 411 ACGGCGTGATTCACTTGCCTTCCGGTAGTTTTAGTCAAGTTTATGATGAGTTTAGGAGAA 470
Query 299 GATTAGTTGATTTTGAGGATTTGGGGAATTTGAAATTTAGTGTTTCTTTGAATGGTGTGT 358
||||||||| | |||||||||||||||||||||| ||||| | |||||||||||| || |
Sbjct 471 GATTAGTTGGTGTTGAGGATTTGGGGAATTTGAAGTTTAGGGCTTCTTTGAATGGGGT-T 529
Query 359 T-TGTTAATCGTGTTAGAGTTAGGAAAGCT-AAGATTCAGGAGGTTACTATAGGTGATGA 416
| ||| ||||||||||||||||||||| || ||| ||||||||||| |||||| ||||||
Sbjct 530 TATGTAAATCGTGTTAGAGTTAGGAAATCTAAAG-TTCAGGAGGTTTCTATAGATGATGA 588
Query 417 GGTATTGTTTGTTTGCGGGAAGGAAGGGTTGTGTTATAAACACGGTCGAGTTGGGTTTAG 476
|||||||||| |||||||||||||||||||||||| |||| | ||||||||||||||| |
Sbjct 589 GGTATTGTTTTTTTGCGGGAAGGAAGGGTTGTGTTGTAAAGATGGTCGAGTTGGGTTT-G 647
Query 477 -GGTTCAAGAGATTGAT-TTTGAAGGAAGAGATACTTCGATTGTATCGGTCTCGTCAGGC 534
|||||| ||||||| | ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 648 TGGTTCAGGAGATTG-TGTTTGAAGGAAGAGATGCTTCGATTGTATCGGTCTCTTCAGGA 706
Query 535 CATTCTCGAGGAACTTTTTCCAGTGGGAAGAGAAGCAAACGGGTTTTTGCTCCGATGGAA 594
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 707 CATTCTCGAGGAACCTTTTCAAGTGGGAAGAGAAGCAAAAGGGTTTTTGCTCCGATGGAA 766
Query 595 AACGAGATTAATTCTCCAGTTTCTGGGGTTTGTCCACGTAAAGCTGTTGGTGTTGCTGAG 654
||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||
Sbjct 767 AACGAGATTAATTCTCCAGTTTCTGGGTTTTATCCACCTAAAGCTGTTGGTGTTGTTGAG 826
Query 655 AGAGTGAATTCTCTTGTAAGCTATTGTAGACATATATTG-AGCAGTGATGATCCTATGTC 713
||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||
Sbjct 827 AGAGTGAATTCTCTTGTAAGCTATTGTAGACATATATTGAAG-AGTGATGATCCTCTATC 885
Query 714 TTGCCTTAGGGTATCTATTATCTCAGATTCTGGAAAGGAATGTCTATCTTGTTGTACATC 773
|||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 886 TTGCCTTAGGCTATCTATTATATCACATTCTGGAAAGGAATGTCTATCTTGTTGTACATC 945
Query 774 CAAAATGTTAAGTTCGAAAGTAAGTATAGTGGCCGATAATAGAGGAGTTAAGAGTGCGGA 833
||||||||| || || |||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 946 CAAAATGTTTAGGTCAAAAGTAGGTATAGTGGCCGATGATAGAGGAGTTAAGAGTGCCGA 1005
Query 834 GAAAAATCATGAGATTGGTTATGGTTTGTCTGGTTTAAGGTTGAGTATTGAACGGCCAAG 893
|| ||||||||| || ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1006 GATAAATCATGATATGGGTCATGGTTTGTCTGGTCTAAGGTTGAGTATTGAACGGCCAAA 1065
Query 894 CCCAAGTTTACATGTAGATAGAAGACTAGGTGTCTCTGACTTGATTAGTGAAATAGAAAA 953
| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1066 CTCAAATTTACATGTAGATAGAAGACTAGGTGTCTCTGACTTGATTAGCGAAATAGAAAA 1125
Query 954 TGACG-GTGCTGCTTGTA-TTTCTGTCAGTGATAAGACTAGGACTATGCTTCCTTTTGAT 1011
|| | ||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 1126 CGA-GTTTGCTGCTTGTACTTT-TATCAGTGATAAGACTAGGACTATGCTTCCTTTTGAT 1183
Query 1012 GGGGTA-AAAGAAAACATTCCCGATATTAGTTGCATCGATAAAGAGAAAAGTCATCTATG 1070
|||| | |||| || | ||||||||||| ||||||| |||||||||||||| ||| | |
Sbjct 1184 GGGG-AGAAAGTTAATACTCCCGATATTACTTGCATCAATAAAGAGAAAAGTTATCAAAG 1242
Query 1071 TTCTCTCCCAGCACCTCCAGCACCTGGGAAGAACTTTTATCTAAATCGTCTTCAATATAT 1130
|||||| | || ||||||||||||||||||||||||||||||||| || |||||
Sbjct 1243 TTCTCT--C--CA-----AGCACCTGGGAAGAACTTTTATCTAAATCGTCTACAGTATAT 1293
Query 1131 TGAACAAAACTCAACTGGTAGTCAACGGGTGGTTTCCTTGCCAGAACTTCTTCACCCTGT 1190
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 TGAACAAAGCTCAACTGGTTGTCAACGGGTGGTTTCCTTGCCAGAACTTCTTCACCCTGT 1353
Query 1191 GGAAAGCATCCAACAAATCTTTATTGCAACATTGACAAGTGATATCTTATGGTTTCTTAC 1250
||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 1354 GGAAAGCATTCAACAAATCTTTCTTGCAACATTTACAAGTGATATTTTATGGTTTCTTAC 1413
Query 1251 CTGTTGTGAGATACCTAGCCACTTGCCTGTGACTATTGCATGTCACCATGCTGAGAGATG 1310
||||||||| | |||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1414 CTGTTGTGATACACCTAGACACTTGCCTGTGACTATCGCATGTCACAATGCTGAGAGATG 1473
Query 1311 TTGGAGTTCAAGCCCTGATGCAAGATCTACTGCT-CCTTTGCCAAATTACCCAAATGTAA 1369
||||||||||| ||||||||||||| || ||| | ||||||||||||||||||||||| |
Sbjct 1474 TTGGAGTTCAAACCCTGATGCAAGAACTGCTG-TGCCTTTGCCAAATTACCCAAATGTGA 1532
Query 1370 CTATGGTGTTTCCACCATTTCCTGAGGAAATTGCATTTGGTAAAGACCGCAAGAACCGTG 1429
||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||
Sbjct 1533 CTATGGTGTATCCACCATTTCCTGAGGAAATTGCATTTGGGAAGGACCGCACGAACCGTG 1592
Query 1430 GCATTGCTTGTCATCACCCTAAGCTGTTTATATTGCAAAGAGAAGTA-AGCATTCGTGTA 1488
||||||||||||||||||| ||||||||||| ||||||||| ||| | ||||||||||||
Sbjct 1593 GCATTGCTTGTCATCACCCCAAGCTGTTTATTTTGCAAAGAAAAG-ATAGCATTCGTGTA 1651
Query 1489 ATTATTACATCTGCAAACTTAGTGGCAAGACAGTGGAATGACGTGACCAACACAGTTTGG 1548
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1652 ATTATCACATCTGCAAACTTAGTAGCAAGACAGTGGAATGACGTGACCAACACAGTTTGG 1711
Query 1549 TGGCAAGATTTTCCTCGAAGAGCAGACCCTGATGTTTTATCCCTTTTCGGCCATTGCCGA 1608
|||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1712 TGGCAAGACTTTCCACGAAGAGCAGACCCTGATCTTTTATCCCTTTTCGGCCATTGCCAA 1771
Query 1609 AGAGAAACCAATCATGGTTTAAAAACAGATTTTTGTGCTCAGCTGGCTGGATTTGCTGCA 1668
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct 1772 AGAGAAACCAATCATGGTTTAAAGCCAGACTTTTGTGCTCAGCTGGCTGGATTTGCCGCA 1831
Query 1669 TCACTTTTGACTGATGTTCCAAGTCAGGCCCATTGGATTATTGAGTTCACGAAGTACAAC 1728
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1832 TCACTTTTGACTGATGTTCCAAGTCAGGCCCATTGGATTCTTGAGTTCACGAAGTACAAC 1891
Query 1729 TTTGAACACTCAGCATGTCACCTTGTGGCTTCAGTGCCTGGAATTCATTCTTATAAGCCA 1788
||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1892 TTTGAACACTCAGCAGGTCACCTTGTTGCTTCAGTGCCTGGAATCCATTCTTATAAGCCG 1951
Query 1789 TCTTATCTTACAGAGTCTGTTTGCTCAAATACCAATTTCAATGAAGAATTTCTGGGATCT 1848
|||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 1952 TCTTATCTCACAGAGTCTGGTTGCTCAAATACCATTTTCAGTGAAGAATTTCTGGGATCT 2011
Query 1849 GTTGAAGCATCTGTTGTAGGTCTCAGTTACCTTTTCCGTTCTGCCAATGATTCCACAGGC 1908
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2012 GTTGAAGCATCTGTTGTAGGTCTCAGTTACCTTTTCCGCTCTGCCAATGATTCCACAGGA 2071
Query 1909 TTACAACTGAAACGACTGGCTTCATATATCCGCAGAGCCCGGGAAAATTCTCTCGGAATG 1968
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2072 GCACAACTGAAACGACTGGCTTCATATATCCGCAGAACCCGGGAAAATTCTCTCGGAATG 2131
Query 1969 TTGGAACTTGTTTTGAGAAGAAATACGAATGTGCCTGCTGACGCGAATGCTGTGAGCGTC 2028
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 2132 TTAGAACTTGTTTTGAGAAGAAATACGAATGTGCCTGCTGACCCGAATGCTGTGAGAGTC 2191
Query 2029 CTTGTTCCTAACCCAGATGATGATTCAAGAGATGATTTTGTCCAACTAGGCTTTTTGCCA 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2192 CTTGTTCCTAACCCAGATGATGATTCAAGAGATGATTTTGTCCAACTAGGCTTTTTGCCA 2251
Query 2089 CGG-GATATTGCAAAATGGGTGTCTCCTTTGTGGGATATTGGGTTCTTTAAATTTGTGGG 2147
||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2252 CGGAG-TATTGCAAAATGGGTGTCTCCTTTATGGGATATTGGATTCTTTAAATTTGTGGG 2310
Query 2148 ATATGTGTTTCGGGATGAAGTCCTTGGAGCTGCTTCTTGTAGGAGCAACGAGAAGGTGCA 2207
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 ATATGTGTATCGGGATGAAGTCCTTGGAGCTGCTTCTTGTAGGAGCAACGAGAAGGTGCA 2370
Query 2208 ACTAATGCTGCATG-------G--AGTGTCCATTTCAGATGTGTCAAAGTTGATTCAACC 2258
|||| ||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 2371 ACTAGTGCTGCATGTATTACAGGGAGTGTCCATTTCAGATATGTCAAAGTTGATTCAACC 2430
Query 2259 TAATCATGTTGTTGCATTGTGCTCGTTGATTGCTTCAGTTCAGAGATGTTCTGGCATTTG 2318
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2431 TTATCATGTTGTTGCATTGTGCTCGTTGATTGCTTCACTTCAGAGATGTACTGGCATTTG 2490
Query 2319 GAGGCTACAAGAGGTGTTAGGCCGTTACAAGTGGCCTGAATCTCAGGAATCTGATTTCGT 2378
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2491 GAGGCTACAAGAGGTGTTAGGCCGTTACAAGTGGCCCGAATCTCAGGAATCTGATTTCGT 2550
Query 2379 CTACAGTGCATCCTCGATTGGAGGCTCAGCAACTGCAGGATTTCAAGCTGATTTTTCATC 2438
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2551 CTACAGTGCATCCTCGATTGGAGGCTCAGCAACTACAGGATTTCAAGCTGATTTTTCATC 2610
Query 2439 AGCTGCAGGTAAAAAAGCGTTACAGCATTTTGACTCCCAGGAGTCTGATCCAGAGTGGGG 2498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2611 AGCTGCAGGTAAAAAAGCGTTACAGCATTTTGACTCCCAGGAGTCTGATCCAGAGTGGGG 2670
Query 2499 ATGCTGGAGTAATAGGGAAGAACGGGAAGCTCCTTCCATTAAAATCATCTTCCCTACCAT 2558
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2671 ATGCTGGAGTAACAGGGAAGAACGGGAAGCTCCTTCCATTAAAATAATCTTCCCTACCAT 2730
Query 2559 TGAAAGAGTCAAGAATGGCCATCATGGTGTCTTGTCTTCAAGACGTCTGCTTTGCTTCTC 2618
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2731 AGAAAGAGTCAAGAATGGCCATCATGGTGTCTTGTCTTCAAGACGTTTGCTTTGCTTCTC 2790
Query 2619 CGAGAAAACCTGGCAAAAGTTGAGATATAATAATGTGCTTCACGATGCAGTTCCTAATCC 2678
||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 2791 TGAGAAAACCTGGCAAAAGTGGAGACATAGCAATGTGCTTCACGATGCAGTTCCTAATCC 2850
Query 2679 TCAAGATAGAGTTGGACACCCGATGCATATCAAGGTGGCTAGGAGACTCTTTACCTCCAC 2738
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2851 TCAAGATAGAGTTGGACACCCAATGCATATCAAGGTGGCTAGGAGACTCTTTACCTCCAC 2910
Query 2739 GAGAGGTTCACGATCTTCTTCGTTTGGTTGGGTTTACTGCGGCTCACATAATTTCAGTGC 2798
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2911 GAGAGGTTCACGATCTTCTTCGTTTGGTTGGGTTTACAGCGGCTCACATAATTTCAGTGC 2970
Query 2799 AGCTGCCTGGGGACGGACCATTTCCAGATCCTCCAGGAACAACCAGGACCAGTCCCACAA 2858
|||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 2971 AGCTGCCTGGGGACAGACCATATCCAGATCCTCCAGAAACAACCAGGACCAGTCAAACAA 3030
Query 2859 TGCCATCAGATCAGTTAAAAAACTTCGTGTATGTAACTATGAGCTCGGGATTGTCTTCGT 2918
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3031 TGCCATCAGAGCAGTTAAAAAACTTCGTGTATGTAACTATGAGCTCGGGATTGTGTTCGT 3090
Query 2919 TTTCCCTCCGCCTCATGAAGAAATGGATTCATGTGACCGGTCTAAGATCAATGATATTGT 2978
||||||||| ||||||||||||| || ||||| || ||||||| || ||||||||||
Sbjct 3091 TTTCCCTCCACCTCATGAAGAAACCGACTCATGCGAAGGGTCTAAAATTGATGATATTGT 3150
Query 2979 GTTGCCGTTTATTGTACCGGCTCCAAAATATGGATGGAGTGATAGACCAGCTACAGGTTT 3038
||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 3151 CTTGCCTTTTGTTGTACCGGCTCCAAAATATGGATGGAGTGATAAACCGGCTACAGGTTT 3210
Query 3039 GGCTATGAGAGAAGCTTTGGCTGAGTTTAGGGAAGGC-CTTagaagtttctgtggagaat 3097
||||||||| |||||||| |||||||||||||||||| || | |||||||||||||||||
Sbjct 3211 GGCTATGAGGGAAGCTTTTGCTGAGTTTAGGGAAGGCTCT-ACAAGTTTCTGTGGAGAAT 3269
Query 3098 cagaagctgaggaagaagtggaagaagaagatgaagatgaagatgaagctgaaggaagag 3157
|||||| |||||||||||| ||||||||||| ||||| |||| ||| |||||||||||||
Sbjct 3270 CAGAAGTTGAGGAAGAAGTAGAAGAAGAAGAGGAAGAAGAAGCTGATGCTGAAGGAAGAG 3329
Query 3158 tagagtttgttgcagaagaggtgaagCAAGAGGAAAAGGCTTATGCTGAGGCCTTGTGGA 3217
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 3330 GAGAGTTTGTTGCAGAAGAGGAGAAGCAAGAGGAAGAGGCTTATGCTGAGGCCTTGTGGA 3389
Query 3218 GCCAGGTTGA---ATCCTCCTCCTCCCTCAGCTCCTGA 3252
|||||||||| |||||| ||||||||||||||||||
Sbjct 3390 GCCAGGTTGAGTCATCCTCATCCTCCCTCAGCTCCTGA 3427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161788391175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5