BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892681

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07490.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   737    0.0  


> AT5G07490.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G61630.1); 
Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:2370136-2371326 
FORWARD LENGTH=885
Length=885

 Score =  737 bits (399),  Expect = 0.0
 Identities = 435/452 (96%), Gaps = 4/452 (1%)
 Strand=Plus/Plus

Query  1    ATGTACAGATCCGCGAGCTGGAACCGTGTGACGGAGGATTACTCTGTGCCTTGGTCAGCA  60
            |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct  113  ATGTACAGATCCGCGAGCTGGAACCGTGTGACCGAGGATTACTCGGTGCCTTGGTCCGCA  172

Query  61   CCAAAGGGATTATGGAAGGGCTTAGACGAAGACGAGCCGGCTCCATACGATCCCATC-GG  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  173  CCAAAGGGATTATGGAAGGGCTTAGACGAAGACGAGCCGGCTCCATACGATCCCA-CTGG  231

Query  120  CCAAGAAG-TGACCAAGAAAGAGAAGTCACGTACCAAGTTTGCTGAAAACGCCGTTCACA  178
            ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  232  CCAAG-AGATGACTAAGAAAGAGAAGTCACGTACCAAGTTTGCTGAAAACGCCGTTCACA  290

Query  179  TAATCCCTTTTGTCCTTCTTGCTTGTGCTCTCGTCCTTTGGTTCTTCTCTAATCCAGATG  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  291  TAATCCCTTTTGTCCTTCTTGCTTGTGCTCTCGTCCTTTGGTTCTTCTCTAATCCAGATG  350

Query  239  TAGATGTTGGGGTGAGAGGGGAATCCATTGCAGCTAGGATTGAAGGATTAACGATCGAAG  298
            ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  351  TAGATGTTGGGGTGAAAGGGGACTCCATTGCGGCTAGGATTGAAGGATTAACGATCGAAG  410

Query  299  GAGACATTGACAATGATAGCGACGGAACTCAAACCGGATTCTTAGGAGCCGCCACAGATG  358
            |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct  411  GAGACATTGACAATGACAGCGACGGAACTCAGACCGGATTCTTAGGAGCCGCCACAGAGG  470

Query  359  TCGGACATTCAAAAAATAAACTAAAACGCGACGTTAATAAAAGCAATCGGAGGATACAAG  418
            ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct  471  TCGGACATTCAAAAAATAAACTAAAACGCGAGGCTAATAAACGCAATCGGAGGATACAAG  530

Query  419  CTTCAAGGAAAGTGATGAAAGGTTTTTATTAA  450
            ||||||||||||||||||||||||||||||||
Sbjct  531  CTTCAAGGAAAGTGATGAAAGGTTTTTATTAA  562



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21414061074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5