BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892702
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07700.1 | Symbols: MYB76, AtMYB76 | myb domain protein 76 |... 1458 0.0
AT5G07690.1 | Symbols: MYB29, ATMYB29, PMG2 | myb domain protei... 425 3e-118
AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 | ch... 411 9e-114
> AT5G07700.1 | Symbols: MYB76, AtMYB76 | myb domain protein 76
| chr5:2450325-2451578 FORWARD LENGTH=1017
Length=1017
Score = 1458 bits (789), Expect = 0.0
Identities = 943/1019 (93%), Gaps = 4/1019 (0%)
Strand=Plus/Plus
Query 1 ATGTCAAAGAGACTATGTTGTATCGGAGAAGGATTGAAGAAAGGAGCATGGACTATAGAA 60
||||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1 ATGTCAAAGAGACCATATTGTATCGGAGAAGGACTGAAGAAAGGAGCATGGACTACAGAA 60
Query 61 GAGGATAAGAAACTCATCTCTTATATCCACGAGCACGGTGAAGGAGGCTGGCGTGACATT 120
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GAGGATAAAAAACTCATCTCTTATATCCACGACCACGGTGAAGGAGGCTGGCGTGACATT 120
Query 121 CCAGAAAAAGCTGGGCTGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAACTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAGAAAAAGCTGGGCTGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAACTAT 180
Query 181 TTGAAACCAGATATCAAGAGAGGAGAGTTTAGCTATGAGGAAGAGCAGATTATCATCATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGAAACCAGATATCAAGAGAGGAGAGTTTAGCTATGAGGAAGAGCAGATTATCATCATG 240
Query 241 CTTCATGCCTCTCGTGGCAATAAGTGGTCCACCATAGCAAGACATTTGCCAAAAAGAACG 300
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 241 CTTCATGCATCTCGTGGCAATAAGTGGTCTGTCATAGCTAGACATTTGCCAAAAAGAACG 300
Query 301 GATAACGAGGTCAAGAACTATTGGAACACACATCTCAAGAAACGTTTGATCGATAATGGC 360
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 301 GATAACGAGGTCAAAAACTATTGGAACACACATCTCAAGAAACGTTTAATCGATGATGGC 360
Query 361 ATTGATCCCGTGACACACAAGCCACTAGATTCTTCTAACCCTGGTTCGGCCGTGCCCAAA 420
|||||||||||||||||||||||||||| ||||||||||||| | | | | |||||
Sbjct 361 ATTGATCCCGTGACACACAAGCCACTAGCTTCTTCTAACCCTAATCCAGTTGAGCCCATG 420
Query 421 AAGTTTGATTGCCAAGATAAATCCATTCCGGATGAGCACTCGGT-ACAATGGAGTTCTAC 479
||||| |||| |||| | ||||||| || |||||||||||| | ||| | ||||||||
Sbjct 421 AAGTTCGATTTCCAAAAGAAATCCAATCAGGATGAGCACTCT-TCACAGTCTAGTTCTAC 479
Query 480 CACTCCAGCATCTCTTCCCCTTTCTTCGACTTTTAACAGTGTTAAACCCAAAATTAGCAG 539
||||||||||||||||||||||| |||| ||| |||||||||||| |||||||||||||
Sbjct 480 AACTCCAGCATCTCTTCCCCTTTCCTCGAATTTGAACAGTGTTAAATCCAAAATTAGCAG 539
Query 540 TGGTGAGACGCAGATAGAAAGTGGTTTCTTGAGGTGCAAGAAACGTTTTGAACGATCGAG 599
||||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||
Sbjct 540 TGGTGAGACGCAGATAGAAAGTGGTCACGTGAGCTGCAAGAAACGTTTTGGACGATCGAG 599
Query 600 TTCTACATCAAGGCTGTTAAACAAAGTTGCAGCTAGAGCTTCTTCCATCGGCAACATCTT 659
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTCTACATCAAGGTTGTTAAACAAAGTTGCAGCTAGAGCTTCTTCCATCGGCAACATCTT 659
Query 660 ATCAACCTCCATAGAAGGAACCTTGAGTTCTCCTACATCGTCTTCATGTCTCCCAGACTC 719
|||||| |||||||||||||||||||| |||||| |||| |||||| | |||||||||||
Sbjct 660 ATCAACATCCATAGAAGGAACCTTGAGATCTCCTGCATCATCTTCAGGACTCCCAGACTC 719
Query 720 ATTCTCTCAATCATCTGAACACATGATCGATAACAAGGAAGAACTCAGTACGAGCATTGA 779
||||||||||||| ||| |||||||||||||||| ||||| ||| |||||||||||||
Sbjct 720 GTTCTCTCAATCATATGAGTACATGATCGATAACAAAGAAGATCTCGGTACGAGCATTGA 779
Query 780 TATCAACATCCCCGAGTATGATTTTCCACAGTTTCTTGAGCAATTCATTAACGATGACGA 839
| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 780 TCTCAACATCCCCGAGTATGATTTCCCACAGTTTCTTGAGCAACTCATTAACGATGACGA 839
Query 840 CGAAGCCGAGAACACTGGTGGGTCC-AACCAAGATCTCCTTATGTCCGATGTCCCATCAA 898
|||| ||||||| || |||| || ||| |||||||||||||||||||| |||||||||
Sbjct 840 CGAAAATGAGAACATTGTTGGGCCCGAAC-AAGATCTCCTTATGTCCGATTTCCCATCAA 898
Query 899 CATTCGTTGATGAAGACGATATAATTGGAGACATAACCAGTTGGTCAACTTATCTTCTTG 958
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 CATTCGTTGATGAAGACGATATACTTGGAGACATAACCAGTTGGTCAACTTATCTTCTTG 958
Query 959 ACCATCCCAATTTTATGTATAAATCGGATCAAGATTCCGAGGAGAAGAACTTCTTATGA 1017
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 959 ACCATCCCAATTTTATGTATGAATCGGATCAAGATTCCGACGAGAAGAACTTCTTATGA 1017
> AT5G07690.1 | Symbols: MYB29, ATMYB29, PMG2 | myb domain protein
29 | chr5:2446764-2448543 FORWARD LENGTH=1595
Length=1595
Score = 425 bits (230), Expect = 3e-118
Identities = 338/390 (87%), Gaps = 8/390 (2%)
Strand=Plus/Plus
Query 1 ATGTCAAAGAGA-CTATGTTGTATCGGAGAAGGATTGAAGAAAGGAGCATGGACTATAGA 59
||||| |||| | | ||||||| | ||||||||| |||||||||||||||||||| ||
Sbjct 327 ATGTC-AAGAAAGCCATGTTGTGTGGGAGAAGGACTGAAGAAAGGAGCATGGACTGCCGA 385
Query 60 AGAGGATAAGAAACTCATCTCTTATATCCACGAGCACGGTGAAGGAGGCTGGCGTGACAT 119
||| || ||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 386 AGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACAT 445
Query 120 TCCAGAAAAAGCTGGGCTGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAACTA 179
||| |||||||||| || ||||| |||||||||||||||||||| || ||| |||||||
Sbjct 446 TCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACTA 505
Query 180 TTTGAAACCAGATATCAAGAGAGGAGAGTTTAGCTATGAGGAAGAGCAGATTATCATCAT 239
||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 506 TTTGAAACCTGACATCAAGAGAGGAGAGTTTAGCTATGAGGAGGAACAGATTATCATCAT 565
Query 240 GCTTCATGCCTCTCGTGGCAATAAGTGGTCCAC-CATAGCAAGACATTTGCCAAAAAGAA 298
||| || || ||||| ||||| |||||||| | |||||| ||||||||||| |||||||
Sbjct 566 GCTACACGCTTCTCGCGGCAACAAGTGGTC-AGTCATAGCGAGACATTTGCCCAAAAGAA 624
Query 299 CGGATAACGAGGTCAAGAACTATTGGAACACACATCTCAAGAAACGTT--TGATCGATAA 356
| ||||||||| | |||||||| |||||||| |||||||| ||| | | ||||||||||
Sbjct 625 CAGATAACGAGATTAAGAACTACTGGAACACGCATCTCAA-AAA-GCTCCTGATCGATAA 682
Query 357 TGGCATTGATCCCGTGACACACAAGCCACT 386
|| || ||||||||||| |||||||||||
Sbjct 683 GGGAATCGATCCCGTGACCCACAAGCCACT 712
> AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 |
chr5:24689151-24690797 REVERSE LENGTH=1427
Length=1427
Score = 411 bits (222), Expect = 9e-114
Identities = 340/397 (86%), Gaps = 8/397 (2%)
Strand=Plus/Plus
Query 1 ATGTCAAAGAGA-CTATGTTGTATCGGAGAAGGATTGAAGAAAGGAGCATGGACTATAGA 59
||||| |||| | | |||||| |||||||||| |||||||||||||||||||| | ||
Sbjct 3 ATGTC-AAGAAAGCCATGTTGCGTCGGAGAAGGCTTGAAGAAAGGAGCATGGACCACCGA 61
Query 60 AGAGGATAAGAAACTCATCTCTTATATCCACGAGCACGGTGAAGGAGGCTGGCGTGACAT 119
||||| ||||||||||||||||| |||||||| ||||| || ||||||||||| |||||
Sbjct 62 GGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGCGAGGGAGGCTGGCGCGACAT 121
Query 120 TCCAGAAAAAGCTGGGCTGAAACGGTGTGGAAAGAGTTGTAGATTACGGTGGACTAACTA 179
||| ||||||||||| |||||||||||||||||||||||||| | || ||||| |||||
Sbjct 122 TCCCCAAAAAGCTGGGTTGAAACGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAACTA 181
Query 180 -TTTGAAACCAGATATCAAGAGAGGAGAGTTTAGCT-ATGAGGAAGAGCAGATTATCATC 237
|| ||||| || ||||| ||||| |||||||| | | |||||||||||||||||||||
Sbjct 182 CCTT-AAACCTGAGATCAAAAGAGGCGAGTTTAGTTCA-GAGGAAGAGCAGATTATCATC 239
Query 238 ATGCTTCATGCCTCTCGTGGCAATAAGTGGTCCACCATAGCAAGACATTTGCCAAAAAGA 297
||||||||||| ||||||||||| |||||||| |||||| |||||||| || | ||||
Sbjct 240 ATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTCATAGCGAGACATTTACCTAGAAGA 299
Query 298 ACGGATAACGAGGTCAAGAACTATTGGAACACACATCTCAAGAAACGTTTGATCGATA-A 356
|| || |||||| |||||||||| |||||||| |||||||| ||||||||||| || | |
Sbjct 300 ACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATGGA-ACA 358
Query 357 TGGCATTGATCCCGTGACACACAAGCCACTAGATTCT 393
|| |||||||||||||| ||||||||||| | ||||
Sbjct 359 GGGTATTGATCCCGTGACTCACAAGCCACTGGCTTCT 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5