BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892731
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08030.1 | Symbols: | PLC-like phosphodiesterases superfami... 1895 0.0
> AT5G08030.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr5:2575033-2576783 REVERSE LENGTH=1251
Length=1251
Score = 1895 bits (1026), Expect = 0.0
Identities = 1088/1119 (97%), Gaps = 0/1119 (0%)
Strand=Plus/Plus
Query 1 ATGGTCTTCAAGTATTTTCTACCATTGCTTTTACTGTCATTGTTGGTTGCTAATTGTGCC 60
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 ATGGCCTTCAAGTATCTTCTACCATTGCTTTTACTGTCATTGTTGGTTGCTAATTGTGCC 73
Query 61 TCAAGGCCATTGTATCGTCTCCCAAGTGAAGAAAAACATGCTACCAAGAAACCGCTTCAG 120
|||||||| ||||||||||||||||| |||| ||||||||| ||||||||||| ||||||
Sbjct 74 TCAAGGCCTTTGTATCGTCTCCCAAGCGAAGCAAAACATGCAACCAAGAAACCACTTCAG 133
Query 121 ACTTCTCGTCCATATAACCTTGCACACAGAGGATCAAACGGAGAGTTGCCTGAAGAAACT 180
||||| ||||| || |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 134 ACTTCCCGTCCTTACAACCTTGCACACAGAGGATCAAACGGAGAGCTCCCTGAAGAAACT 193
Query 181 GCTCCTGCATATATGAGGGCCATTGAGGAGGGTGCAGATTTCATAGAAACAGATATTTTA 240
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 194 GCTCCTGCATATATGAGGGCCATAGAGGAGGGTGCAGATTTTATAGAAACCGATATTTTG 253
Query 241 TCTTCCAAAGACGGTGTACTTATATGTCACCACGATGTTAATCTGGATGATACAACCGAT 300
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 254 TCTTCCAAAGACGGTGTTCTTATATGTCACCACGATGTTAATCTCGATGATACAACCGAT 313
Query 301 GTTGCAGACCATAAGGAGTTTGCAGACCGTAAGAGGACTTATGAAGTCCAAGGAATGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GTTGCAGACCATAAGGAGTTTGCAGACCGTAAGAGGACTTATGAAGTCCAAGGAATGAAC 373
Query 361 ATGACCGGCTTCTTCACTGTTGATTTTACTCTCAAAGAGCTGAAAACACTTGGTGCAAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 ATGACCGGCTTCTTCACTGTTGATTTTACTCTCAAAGAGCTGAAAACACTTGGTGCAAAG 433
Query 421 CAGAGGTATCCTTTCAGGGATCAACAATACAATGGTAAATTCCCGATTATTACCTTCGAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CAGAGGTATCCTTTCAGGGATCAACAATACAATGGTAAATTCCCGATTATTACCTTCGAC 493
Query 481 GAGTATATTTCGATAGCATTGGATGCACCTAGAGTAGTTGGGATATATCCAGAGATCAAG 540
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 494 GAGTATATTTCGATAGCACTGGATGCACCTAGAGTGGTTGGGATATATCCAGAGATCAAG 553
Query 541 AATCCGGTTTTTATAAATCAGCAAGTGAAATGGGCGGATGGTAAAAAATTTGAAGATAAA 600
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 554 AATCCGGTTTTCATGAATCAGCAAGTGAAGTGGGCGGATGGTAAAAAATTTGAAGATAAA 613
Query 601 TTTGTGGAAACTTTGGAGAAATATGGATACAAAGGCTCATATATGTCTGAAGATTGGTTA 660
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 614 TTTGTGGAAACTTTGAAGAAATATGGATACAAAGGCTCATATCTGTCTGAAGATTGGTTA 673
Query 661 AAACAGCCAATATTTATTCAGTCTTTTGCAGCAACTTCGCTAGTTTACATTTCAAGCATG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 674 AAACAGCCAATATTTATTCAGTCTTTTGCAGCAACTTCGCTAGTTTACATTTCAAACATG 733
Query 721 ACAGACTCACCAAAATTGTTCTTGATCGACGATGTCACTATTCTTACCGAAGACACTAAT 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 734 ACAGACTCACCAAAATTGTTTTTGATCGACGATGTCACTATTCTTACCGAAGACACTAAT 793
Query 781 AAGACTTACGCAGAGATCACATCAGACGCATATTTGGATTACATTAAACCATATGTAATT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 AAGACTTACGCAGAGATCACATCAGACGCATATTTGGATTACATTAAACCATATGTAATT 853
Query 841 GGGATTGGTCCATGGAAAGACACAATTGTTCCTGTGAACAATAACCGTCTCATGACACCA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 GGGATTGGTCCATGGAAAGACACAATTGTTCCTGTGAACAATAACCGTCTCATGACACCA 913
Query 901 ACAGATTTAGTTGCGAGAGCACATTCACGTAATCTTCAGGTCCATCCATACACATACCGT 960
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 914 ACAGATTTAGTTGCGAGAGCACATTCGCGTAATCTTCAGGTCCATCCATACACATACCGT 973
Query 961 AATGAGAACCAGTTTCTGCATTTAGAGTTTAATCAAGACCCTTATCTAGAGTATGATTAT 1020
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 974 AATGAGAACCAGTTTCTGCATTTAGAGTTTAATCAGGACCCTTACCTAGAGTATGATTAT 1033
Query 1021 TGGCTCAATAAGATTGGTGTTGATGGTTTGTTCACTGATTTCACTGGAAGTCTACACAAT 1080
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TGGCTCAATAAGATCGGTGTTGATGGTTTGTTCACTGATTTCACTGGAAGTCTACACAAT 1093
Query 1081 TACCAGGAATTGAAGTCTCCTTTGCCTCAGCAACAGTGA 1119
|||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TACCAGGAATTGAAGTCTCCTTTGCCTCAGCAACAGTGA 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5