BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892739
Length=3204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08110.1 | Symbols: | nucleic acid binding;ATP-dependent he... 2606 0.0
> AT5G08110.1 | Symbols: | nucleic acid binding;ATP-dependent
helicases;ATP binding;helicases;ATP-dependent helicases | chr5:2594722-2600114
REVERSE LENGTH=3558
Length=3558
Score = 2606 bits (1411), Expect = 0.0
Identities = 1598/1688 (95%), Gaps = 13/1688 (1%)
Strand=Plus/Plus
Query 1508 TGGAGCTTGCAAACCTATCTGAGCTCGAGCTGGTAGTAAAAGATGGAAGTCCTTCCTCTG 1567
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1721 TGGAGCTTGCAAACCTATCTGAGCTCGAGCTGGTAACAATAGATGGAAGTCCTTCCTCTG 1780
Query 1568 AAAAGCTTTTTGTCTTGTGGAATCCATCAGCTCCTCCAGCAATTAAACCTGAAGAAAGTT 1627
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||
Sbjct 1781 AAAAGCTTTTTGTCTTGTGGAATCCATCAGCTCCTCCAACAAGTAAATCTGAAAAAAGTT 1840
Query 1628 CGAAAGTCGTGAGTAGTAGTGAAGCTGCTGCAGATAAACCATCTGGAGCTACTGCCGCCG 1687
| |||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 1841 CAAAAGTCGTGAGTAGTAGTGAAGCTGCTGCAGATAAACCATCTGGAG---CTGCTGTCG 1897
Query 1688 ATACACCATCAGGCCCAGCTTCTGAAGTTTCACACCTTTTTGCAGAGATGGTTCAGCATG 1747
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1898 ATACACTATCAGGCCCAGCTTCTGAAGTTTCACACCTTTTCGCAGAGATGGTTCAGCATG 1957
Query 1748 GATTACGTTGCATTGTTTTTTGTCCATCTCGCAAACTCTGTGAACTTGTTCTGTGTTTGA 1807
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 GATTACGTTGTATTGCTTTTTGTCCATCTCGCAAACTCTGTGAACTTGTTCTGTGTTTGA 2017
Query 1808 CACGTGAAATTCTAGCTGAGACTGCCCCTCATCTGGTTGAAGCCATAACCTCATATCGTG 1867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 CACGTGAAATTCTAGCTGAGACTGCCCCTCATCTGGTTGAAGCCATAACCTCATATCGTG 2077
Query 1868 GAGGCTACATTGCTGAGGATCGGAGGAAAATAGAGAGCGATTTATTCGGTGGAAAGCTTT 1927
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 2078 GAGGCTACATTGCTGAGGACCGGAGGAAAATAGAGAGTGATTTATTTGGTGGAAAGCTTT 2137
Query 1928 GTGGTATTGCTGCAACAAACGCACTTGAGTTGGGGATTGATGTTGGTCACATCGATGTAA 1987
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2138 GTGGCATTGCTGCAACAAACGCACTTGAGTTGGGGATTGATGTTGGTCACATCGATGTAA 2197
Query 1988 CTCTTCATTTAGGTTTTCCCGGCAGTATTGCCAGTCTTTGGCAGCAAGCCGGCCGGTCTG 2047
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2198 CTCTTCATTTAGGTTTTCCCGGGAGTATTGCCAGTCTTTGGCAGCAAGCCGGTCGGTCTG 2257
Query 2048 GAAGACGACAAAAGCCCTCTCTTGCTGTATATGTTGCCTTTCTCGGTCCGCTTGACCAAT 2107
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2258 GAAGGCGACAAAAGCCCTCTCTTGCTGTATATGTTGCCTTTCTCGGCCCGCTTGACCAAT 2317
Query 2108 ACTACATGAGTTTTCCGGACAAACTCTTTGGTAGCTCAATTGAGTGTTGCCATATTGATT 2167
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2318 ACTACATGAGCTTTCCGGACAAACTCTTTGGTAGCCCAATTGAGTGTTGCCATATTGATT 2377
Query 2168 CTCAAAATAAGCATGTCCTT-TCGCAGCATTTGGCTTGTGCTGCTCTTGAGCATCCGTTG 2226
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 2378 CTCAAAATAAGCATGTCCTTAT-GCAACATTTGGCTTGTGCTGCTCTTGAGCATCCGTTG 2436
Query 2227 AGCTTACAGTATGATGAACAGCACTTTGGTTCTGGCATAAGCGGCGCTCTTGCTGAGCTC 2286
|||||||| |||||| |||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 2437 AGCTTACAATATGATCAACAGCACTTTGGTTCTGGCTTAAGCGACCCTCTTGCTGAGCTC 2496
Query 2287 AGGAAGGAAGGATTCTTGAGTTTTGATCCATCCCGTGATTCTTCTTCTAGAATATGGAAC 2346
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2497 AGGAACAAAGGATTCTTGAGTTTTGATCCATCCCGTGATTCTTCTTCTAGAATATGGAAC 2556
Query 2347 TATATTGGTCGAGAGAAAAAGCCTACGAAGATTGTCTCTATACGGGCCATAGAGACAGTA 2406
|||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||
Sbjct 2557 TATATTGGTCGAGAGAAAAATCCTGCGAGGATAGTCTCTATACGGGCCATAGAGACAGTA 2616
Query 2407 AGATACAGAGTCATGGaaaaaaaGAGTAAAGATCTTCTCGATGAAATCGAGGAAAGCAAA 2466
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2617 AGATACAGAGTCATGGAAAAAAAAAGTAAAGATGTTCTCGATGAAATCGAGGAAAGCAAA 2676
Query 2467 GCCTTTTTCCACGTATATGAAGGAGCTATTTATATGAACCAAGGAAGGAACTATCTGGTC 2526
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2677 GCGTTTTTCCACGTATATGAAGGAGCTATTTATATGAACCAAGGAAGGAACTACCTGGTC 2736
Query 2527 ACGAGTCTGGATATAAAAGAAAAGGTAGCTTTGTGTGAACTAGTAGACGTGGATTACTAC 2586
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2737 ACGAGTCTGGATATAAAAGAAAAGGTAGCTCTGTGTGAACTAGTAAACGTGGATTACTAC 2796
Query 2587 ACCAGGACTCGGGATTACACTGATATTAAAGTAACTGGTGGTGACACTGCTTAC--GAA- 2643
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 2797 ACCAGGACTCGGGATTACACTGATATCAAAGTAACTGGTGGTGACACTGCTTACCCGGTC 2856
Query 2644 AAGAA-CCAAAGTAATAAGCCAACACCACAAAGTCATGCATGTAGAGTGACAACAAAGTG 2702
||| |||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2857 AAGGCTCCAAAG-AA---GCCAACACCACAAACTCATGCATGTAGAGTGACAACAAAGTG 2912
Query 2703 GTTTGGATTTCTTCGTATCCGAAGAAAAAACAATGAAGTAATTGATGATGTTGAGCTTTC 2762
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2913 GTTTGGATTTCTTCGTATCCGAAGAAGAAACAATGAAGTAATTGATGATGTTGAGCTTTC 2972
Query 2763 ACTCCCAAGTTACACTTACGAATCACAGGCTGTTTGGATTCAAGTCCCGATGTCAGTAAA 2822
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 2973 ACTCCCAAGTTACACTTACCAATCACAGGCTGTTTGGATTCAAGTGCCGATGTCGGTAAA 3032
Query 2823 ACTAGCAGTGGAGACGGCAAAATTGCCATTCCGTGCTGGTTTACACGCAGCTTGTCACGC 2882
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3033 ACTAGCAGTGGAGACGGCAAACTTGCCATTCCGTGCTGGTTTACACGCAGCTTGTCACGC 3092
Query 2883 TCTTGTCAACGTTGTTCCAGTAAAAGTGACATGCAACTATTCAGACATAGCTCCAGAATG 2942
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 3093 CCTTGTCAACGTTGTTCCAACAAGAGTGACATGCAACTATTCAGACATAGCTCCAGAATG 3152
Query 2943 TCCAAATCCGCAAGAGCAACGCTATTTCCCAGCAAGAATCTTACTGTATGATCGTCATCC 3002
||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 3153 TCCAAATCCGCAAGAGCAACGGTATTTCCCAGCAAGAATCTTAGTATATGATCGTCATCC 3212
Query 3003 TGGAGGAACTGGCATATCCGCCAAGATCCGTCCGTTCTTCACAGAGCTTCTAAAAGATGC 3062
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 3213 TGGAGGAACTGGCATATCCGCCAAGATCTGTCCGCTCTTCTTTGAGCTTCTAAAAGATGC 3272
Query 3063 TGGTGAACTCTTAAAGTCTTGCGGCAAATGCCCAGCTGAAACTGGTTGCCCCAAGTGCGT 3122
| |||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 3273 TCGTGATCTCTTAAGGTCTTGCGAAAAATGCCCACCTGAAACTGGTTGCCCCAAGTGCGC 3332
Query 3123 TCAGACATTTGGTTGCCGAGGTTACAATGAGCTCTTACATAAGAAAGCAGCCATCATGAT 3182
|||||| |||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 3333 TCAGACTTTTGGTTGCCGAGGGTACAATGAACTCCTACATAAGAAAGCAGCCATCATGAT 3392
Query 3183 CATACAGG 3190
||| ||||
Sbjct 3393 CATGCAGG 3400
Score = 1773 bits (960), Expect = 0.0
Identities = 1088/1150 (95%), Gaps = 7/1150 (1%)
Strand=Plus/Plus
Query 364 AACT-TGAAAGATGAAAACGCTAAAAGAGCTGAGGATCATTGTGTTGGGGAGAAGCGAAA 422
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 330 AACTATGAAAGATGAAAACGCTAAAAGAGCTGAGGATCATTGTGTTGGTGAGAAACGAAA 389
Query 423 ACGGGATGAAGAAGCGTGTCCATATGGATTCTTTGATGGTGTTTTGGAGTCTGAGTGTAA 482
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 390 ACGGGATGAAGAAGCGTGTCCATATGGATTCTTTAATGATGATTTGGAGTCTGAGTGTAA 449
Query 483 AGATGCATTTAAGGGTCAGAACACAGAGAAGCTTGCTGAGGTTTTAAAGTCTAGGAATTG 542
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 450 AGATGCATTCAAGGGTCAGAACACAGAGAAGCTTGCTGAGGTTTTAAAGTCCAGGAATTG 509
Query 543 CTTGACATCTCCACGTTCTACAAAATGCTTGATGTCATGGGATTCAAGTAGCTCTTTGTG 602
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CTTGACATCTCCAGGTTCTACAAAATGCTTGATGTCATGGGATTCAAGTAGCTCTTTGTG 569
Query 603 TTCTTGTCCAGATTGGGAATCTCTTTCCCGGTTAGCAT-TGTCTGGAGTTCGTGTTGGTA 661
||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 570 TTCTTGTCCTGATTGGGAATCTCTTTCCCGGTTAGC-TATGTCTGGAGTTCGTGTTCGTA 628
Query 662 TACAAGACGTTAAGAATCTCTCAGTTATATGTCCCAAGGTTATCACTGATGACTTTGAGG 721
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 629 TACAAGACGTTAAGAATCTCTCTGTTATATGCCCCAAGGTTATCACTGATGACTATGAGG 688
Query 722 CTGTGAACTATGAGAATGCTATTGTTATAGCTGATTATCCGGAGA-GAGATGAGAAACCA 780
|||||||||||||||| ||||| ||||||||||| |||| ||||| | ||||| ||| ||
Sbjct 689 CTGTGAACTATGAGAACGCTATAGTTATAGCTGACTATCTGGAGATG-GATGAAAAATCA 747
Query 781 GGTCGTAAGAAAACTCCACTTGCAAAGGTCTTTAGTGCCATGAAAAAACGGGAGACTTCC 840
|||||||| |||| ||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 748 GGTCGTAAAAAAATTCCTCTTGCAAAGCTCTTTAGTGCCATGAAAAAACGGGAGGCTTCC 807
Query 841 TTTAAGTCTGATTTCTGGGACTCCATCAAATCGCTACTGAACAAAAATACAGGTGAGAGT 900
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 808 TTTAAGTCTGATTTCTGGGAGTCCATCAGATCGCTACTGAACAAAAATACAGGTGAGAGT 867
Query 901 GGAATAGCTATTTCCTTGGAGGGCATGCTTAAATTTGCCAGTGAAGGTAGAGCTGTTGGT 960
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct 868 GGAATAGCTATTTCCTTGGAGGGCTTGCTTAAATTTGCCAGTGAAGGAAGAGCTGATGGT 927
Query 961 GGAAACGAAGCTAGACAGGCTGGGAAAGGCAGTTTTCCTTCCTCTGGTTCTCGTAAATCC 1020
||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| |
Sbjct 928 GGAAACGAAGCTAGACAGGCTGGGAAAGGCACTTGTCCTACCTCTGGTTCTCGTAAATTC 987
Query 1021 CAGACCTTGTGTCATAAAACAAATTCATTGCTACCATCAGAGATGGTTGAACATCTCAGG 1080
||||| ||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 988 CAGACTTTGTGTCATGCCACAAATTCACTGCTACCATCGGAGATGGTTGAACATCTCAGG 1047
Query 1081 AATGGTATTGGATCTAAAGGACAGGTAGTTCACGTTGAAGTAATCAATGCTAGAAAATCT 1140
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 1048 AATGGTATTGGATCTAAAGGACAGGTAGTTCACGTTGAAGTTATCAAGGCCAGAAAATCT 1107
Query 1141 GCCTATGTCGAAATGTCAGATAAGCTCTCAGAAACCACCAAGTCTGCCTTGAAACGGATT 1200
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1108 GCCTACGTCGAAATGTCAGATAAGCTCTCGGAAACCACCAAGTCTGCCTTGAAACGAATT 1167
Query 1201 GGACTCAACACGTTATATAGCCATCAGGCTGAAGCTATTTCAGCAGCCTTGTCTGGGAAG 1260
|| |||||||| ||||| ||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 1168 GGTCTCAACACATTATACAGCCATCAGGCTGAAGCAATTTCAGCAGCCTTGGCTGGAAAG 1227
Query 1261 AATGTTTCGGTTGCAACTATGACTTCCAGTGGAAAATCTCTTTGCTATAATGTGCCAGTC 1320
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1228 AATGTTGCGGTTGCAACTATGACTTCCAGTGGAAAATCTCTTTGCTATAACGTGCCAGTC 1287
Query 1321 TTTGAGGAATTGTGCAAAGATACAAATTCTTGTGCCTTGTACTTATTTCCGACCAAGGCC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TTTGAGGAATTGTGCAAAGATACAAATTCTTGTGCCTTGTACTTATTTCCGACCAAGGCC 1347
Query 1381 TTAGCTCAGGATCAATTAAGAGCATTGTCTGATTTGATAAAAGGATTCGAAGCAAGCATA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 TTAGCTCAGGATCAATTAAGAGCATTGTCTGATTTGATAAAAGGATTCGAAGCAAGCATA 1407
Query 1441 CAA-ATGGGTGTGTACGATGGTGATACTCCTTATAAGGATAGAACAAGGCTGAGGAGTAA 1499
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1408 -AACATGGGTGTATACGATGGTGATACTCCTTACAAGGATAGAACAAGGCTGAGGAGTAA 1466
Query 1500 TGCTAGACTG 1509
||||||||||
Sbjct 1467 TGCTAGACTG 1476
Score = 448 bits (242), Expect = 2e-124
Identities = 304/333 (91%), Gaps = 7/333 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAACGAGAGACGCAGCGGCGGAGGAGACACTGTTGCGATTTTTGTCCGAAGC-TG 59
|||||||||||||||||||||||||||||||||| |||| |||| | |||||||||| |
Sbjct 1 ATGGAGAACGAGAGACGCAGCGGCGGAGGAGACAGTGTTCCGATCTCTGTCCGAAGCAT- 59
Query 60 TAACGGCGAATCGACGACCGTTCAGGTTCCCTCAGACGGGACAATTCGTGACATTAAGAA 119
|||||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||
Sbjct 60 TAACGGCGAATCGACGACCGTTCAGGTTTCCTCTGACGGGACAATTCGTGACCTAAAGAA 119
Query 120 AGCCCTAAAATCCTCTTTCCCTCCCGCTTCTTCTTCTCCCAATTACCATCTGTGGT-TCA 178
|||||||||||||| ||||||||||||||| |||||| |||||| |||||||| | |||
Sbjct 120 AGCCCTAAAATCCTGTTTCCCTCCCGCTTCCTCTTCTTCCAATTTCCATCTGTA-TATCA 178
Query 179 AGGGTGAGAAATTGAAATTGAACACTAGAGTGGCTGCGATTACTATTAATGCCGGTGATA 238
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 179 AGGGTGAGAAATTGAAATTGGACACTAGAGTGGCTGCGATTACTATTAATGACGGTGATA 238
Query 239 TCTTGGGTTTAGTTCCGTTTATCAAGAAGGAACGTCCACACACTCCAAAACCTGATTTAT 298
||||||||||| ||||||||| |||||||||| || ||| |||||||||||||||||||
Sbjct 239 TCTTGGGTTTATTTCCGTTTAAGAAGAAGGAACTTCGACAGACTCCAAAACCTGATTTAT 298
Query 299 CAAAGCCTTCCT--T-GAGTTCAAGAACCTCAA 328
|||| ||||||| | |||||||||||||||||
Sbjct 299 CAAAACCTTCCTCCTTGAGTTCAAGAACCTCAA 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159380377911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5