BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892751
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08240.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1026 0.0
> AT5G08240.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G23160.1);
Has 69 Blast hits to 69 proteins in 10 species: Archae - 0;
Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 68; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:2650837-2652398
REVERSE LENGTH=1384
Length=1384
Score = 1026 bits (555), Expect = 0.0
Identities = 708/779 (91%), Gaps = 22/779 (3%)
Strand=Plus/Plus
Query 1 ATGGCGAAAACAGAGAAGCGAGTCCCAGAAAGACTCGGATCTTCTTCGTATTTCCTCGGC 60
|||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 63 ATGGCGAAAACAGAGAAGAGAGTCCGAGAAGGACTCGGATCTTCTTCGTATTTCCTCGGC 122
Query 61 TGTTTCGGATTTTCCCCGAAAGTATACTCCGACAAGCCGATGGTTACAAAAGAAGACGGT 120
||||||||||| |||| |||| ||||||||||||||||||||||||| || | |||||||
Sbjct 123 TGTTTCGGATTCTCCCGGAAAATATACTCCGACAAGCCGATGGTTACGAAGGGAGACGGT 182
Query 121 --T--------GTA-A-GAAGAAGAAGCGAATTAGTCGGTGGTTTTTATGTTCGAAGTTC 168
| | | | ||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 183 GGTGAGAAGAAGAAGATGAAGAAGAAGCGAATCCCTCGGTGGTTTTTGTGTTCCAAGTTC 242
Query 169 CGCCTGAAGAACGGCGAGATCAAACCGTCGCCGATCGAGGAAACAGAGAAACCTACTTGG 228
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 243 CGCCTGAAGAACAGCGAGATCAAACCGTCGCCGATCGAGGAAACAGAGAAACCTACTTCG 302
Query 229 AGAGTAGAAGATGAAACTGATGATAAGCAGAAACCCCTCTCCGTGATACGTCGTATAACT 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGAGTAGAAGATGAAACTGATGATAAGCAGAAACCCCTCTCCGTGATACGTCGTATAACT 362
Query 289 GATCGTAAAAGTATTCCAGTTGATGATAAAGCCATGAATCAGGAAACAAAAGAGACAAAA 348
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GATCGTAAAAATATTCCGGTTGATGATAAAGCCATGAATCAGGAAACAAAAGAGACAAAA 422
Query 349 CCTAAGGACTTACGAGAC-TCCACCCCTGACCGATCAAAACCCATCGAACCGTTAGGTTC 407
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 423 CCAAAGGACTTACGAGACATA-ACCCCTGACCGATCAAAACCCATCGAACCGTTAGGTTC 481
Query 408 CTTCAAAAAAGACACGTGTCCAGAGCGGATATCTA--ATTCCA-CCCGTTACTTGAAATC 464
||||||| ||||||||||| |||||||||||||| ||| || |||||||| |||| |
Sbjct 482 CTTCAAAGAAGACACGTGTACAGAGCGGATATCTTCTATTTCATCCCGTTACGGGAAACC 541
Query 465 AGACTTGAAACCAACTCGATCAAGAAATGGGTCACGGGTCAAGCCTTTTGACCCGGTAAT 524
||||||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||
Sbjct 542 CGACTTGAAACCAACTCGGTCGAGAAACGGGTCAAGGGTCAAACCTTTTGACCCGGTAAT 601
Query 525 TGGGATTTCGATAATTATATTGACGTTGATGATTATGTTAGTTTGGGGTCGAGTTTGTGC 584
|||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 602 TGGGATATCGATCATTATATTGACGTTGATGATTATGTTAGTGTGGGGTCGACTCTGTGC 661
Query 585 TATTCTGTGTACATCCGCTTGGTGTTACGTCCTACCTCGTGTCAGAGACGCGGCCGCGTT 644
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 662 GATCCTCTGTACATCCGCTTGGTGTTACGTCCTACCTCGTGTCAGAGACGCAGCCGCGTT 721
Query 645 GGCCAAACGCAAACGCAACGGTA--GCGA-TGTAGG-GGATTTGAATTCAGAGTCTTATA 700
|||||||||||||||||||||| || ||| | |||||||||||| ||||| ||||
Sbjct 722 GGCCAAACGCAAACGCAACGGTTCTGCTTCTGT-GCCGGATTTGAATTCGGAGTCGTATA 780
Query 701 AAAGAAAAGTCGTTTTGGACGGGTTTCTTGGACGGCAAAATCGCGTTTCGTTGTCATGA 759
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAGAAAAGTCGTTTTGGACGGGTTTCTTGGACGGCAAAATCGCGTTTCGTTGTCATGA 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5