BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892759
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08315.1 | Symbols: | Defensin-like (DEFL) family protein |... 311 2e-84
AT5G08055.1 | Symbols: | Defensin-like (DEFL) family protein |... 296 6e-80
AT1G33607.1 | Symbols: | Defensin-like (DEFL) family protein |... 296 6e-80
> AT5G08315.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:2676177-2676580 REVERSE LENGTH=249
Length=249
Score = 311 bits (168), Expect = 2e-84
Identities = 223/249 (90%), Gaps = 6/249 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGGTTTGAAAGTTTTTTGTTTTGCTTTGCTCCTTGTTCTCACTTTTTCA---GTT 57
|||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||
Sbjct 1 ATGGCTGGTTTGAAAGTTTTTTCCTTTGCTTTGCTCCTTATTCTCACTTTCTCACTTATT 60
Query 58 GATGTTGAAGGATATGTTGTAGAG-A--GTGGTTCCTTGTGTTGTAATAGCCACCCGAAA 114
||||||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||
Sbjct 61 GATGTTGAAGGATATAATGTAGAGAATGGTGGTTCCTTGTGTTGTAATAACCACCCGAAA 120
Query 115 TTTGGAAAGTGCAACACAAACAACGACGAGCAGAGATGCAACAGTTGGTGTCACAATGGA 174
|||||||||||||||||||| || ||||| |||||||| ||||||||||||| |||||||
Sbjct 121 TTTGGAAAGTGCAACACAAAAAATGACGACCAGAGATGTAACAGTTGGTGTCTCAATGGA 180
Query 175 TGCGGCAATGGAAGAGGCGGTTTCTGCAAATCTCTGCCTCACGGAGGACAATGCCACTGT 234
|||| |||||||| |||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 181 TGCGACAATGGAAAAGGCGGTTACTGCAAATCTATGTCTCACGGAGGACAATGCCACTGT 240
Query 235 CGTTGTTAA 243
|||||||
Sbjct 241 TATTGTTAA 249
> AT5G08055.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:2579401-2579802 FORWARD LENGTH=246
Length=246
Score = 296 bits (160), Expect = 6e-80
Identities = 218/246 (89%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGTTTGAAAGTTTTTTGTTTTGCTTTGCTCCTTGTTCTCACTTTTTCAGTTGAT 60
||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||||||
Sbjct 1 ATGGCCAGTTTGAAAGTTTTTTCTTTTGCTTTGATCCTTGTTCTCACTTTCTCAGTTGAT 60
Query 61 GTTGAAGGATATGTTGTAGAGA---GTGGTTCCTTGTGTTGTAATAGCCACCCGAAATTT 117
|||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 61 GTTGAAGGATATAATGTAGAGAGTGGTGGTTCCTTGTGTTGTAATAACCACCCGAAATTT 120
Query 118 GGAAAGTGCAACACAAACAACGACGAGCAGAGATGCAACAGTTGGTGTCACAATGGATGC 177
|||||||||||||||||||| ||| | |||||||| ||| ||||||||||||||||||||
Sbjct 121 GGAAAGTGCAACACAAACAATGACAATCAGAGATGTAACCGTTGGTGTCACAATGGATGC 180
Query 178 GGCAATGGAAGAGGCGGTTTCTGCAAATCTCTGCCTCACGGAGGACAATGCCACTGTCGT 237
|| ||||||| ||||| || ||||||| || || |||||||||||| ||| || ||| |
Sbjct 181 GGGAATGGAAAAGGCGATTACTGCAAAGCTATGTCTCACGGAGGACTATGTCATTGTTAT 240
Query 238 TGTTAA 243
||||||
Sbjct 241 TGTTAA 246
> AT1G33607.1 | Symbols: | Defensin-like (DEFL) family protein
| chr1:12187018-12187423 REVERSE LENGTH=246
Length=246
Score = 296 bits (160), Expect = 6e-80
Identities = 220/248 (89%), Gaps = 7/248 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGGTTTGAAAGTTTTTTGTTTTGCTTTGCTCCTTGTTCTCACTTTTTCAGTTGAT 60
|||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||| ||
Sbjct 1 ATGGCTAGTTTGAAAGTTTTTTCTTTTGCTTTGCTCATTGTTCTCACTTTCTCAGTT-AT 59
Query 61 GTTGAAGGATATGT--TGTAGAGA---GTGGTTCCTTGTGTTGTAATAGCCACCCGAAAT 115
| | | ||||| | |||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 60 -TGGTATGATATATAATGTAGAGAGTGGTGGTTCTTTGTGTTGTAATAGCCACCCAAAAT 118
Query 116 TTGGAAAGTGCAACACAAACAACGACGAGCAGAGATGCAACAGTTGGTGTCACAATGGAT 175
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 119 TTGGAAAGTGCAACACAAACAATGACGAGCAGAGATGCAACCGTTGGTGTCACAATGGAT 178
Query 176 GCGGCAATGGAAGAGGCGGTTTCTGCAAATCTCTGCCTCACGGAGGACAATGCCACTGTC 235
|||||||||||| |||||||| || ||||||| || ||||||| ||||||||||||| |
Sbjct 179 GCGGCAATGGAAAAGGCGGTTACTACAAATCTATGTCTCACGGGGGACAATGCCACTATT 238
Query 236 GTTGTTAA 243
|||||||
Sbjct 239 ATTGTTAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11008637031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5